Table 2. Genome characteristics (size, number of CDSs, tRNAs and rRNAs and G+C content), genes encoding methane and methanol oxidation, as well as N2 fixation, and estimated genomic completeness and contamination of genomes of Methylobacter sp.
| Strain | Size (bp) | Contigs | CDS | tRNA | 5S rRNA | 16S rRNA | 23S rRNA | GC% | CH4 oxid. | CH3OH oxid. | N2 fix. | Compl. (%) | Contam. (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| M. arcticus G7T | 4003569 | 1 | 3804 | 45 | 3 | 3 | 3 | 47.7 | pmoCAB1 | mxaFIJGACKLD2, xoxF3 | – | 99.43 | 3.11 |
| Ca. M. titanis K-2018 (GCA_029945785.1) | 3468869 | 155 | 3149 | 39 | 1 | 1 | 1 | 47.9 | pmoCAB | mxaFIJGACKLD, xoxF | – | 98.9 | 1.82 |
| Ca. M. titanis D1-2020 (GCA_029946125.1) | 3510200 | 146 | 3209 | 41 | 1 | 1 | 1 | 47.7 | pmoCAB | mxaFIJGACKLD, xoxF | – | 99.24 | 1.58 |
| M. svalbardensis LS7-T4AT (GCA_037671525.1) | 4316257 | 220 | 4072 | 42 | 1 | 1 | 1 | 47.9 | pmoCAB | mxaFIJGACKLD, xoxF | nifDKH4 | 99.72 | 0.63 |
| M. tundripaludum 21/22 (GCA_000685925.1) | 4665210 | 1 | 4176 | 45 | 3 | 4 | 3 | 49.5 | pmoCAB (pxmABC)5 | mxaFIJGACKLD, xoxF | nifDKH | 99.8 | 1.32 |
| M. tundripaludum SV96T (GCA_000190755.3) | 4848329 | 3 | 4412 | 45 | 3 | 2 | 3 | 49.5 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 99.8 | 0 |
| M. tundripaludum OWC-DMM (GCA_002934385.1) | 4607785 | 27 | 4087 | 41 | 1 | 1 | 1 | 49.5 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 99.8 | 0 |
| M. tundripaludum 31/32 (GCA_000733835.1) | 5047546 | 2 | 4605 | 45 | 3 | 3 | 3 | 49.2 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 99.8 | 1.7 |
| Ca. M. oryzae KRF1 (GCA_003994235.2) | 5071213 | 121 | 4431 | 40 | 1 | 1 | 1 | 49.3 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 98.88 | 0.49 |
| M. sp. S3L5C (GCA_022788635.1) | 4815745 | 1 | 4342 | 48 | 5 | 5 | 5 | 43.3 | pmoCAB, mmoXYZBCD6 | mxaFIJGACKLD, xoxF | nifDKH | 99.38 | 2.45 |
| M. psychrophilus Z-0021T (GCA_025583945.1) | 4691082 | 156 | 4076 | 41 | 2 | 1 | 1 | 43.1 | pmoCAB, mmoXYZBCD | mxaFIJGACKLD, xoxF | nifDKH | 99.38 | 1.24 |
| M. luteus IMV-B-3098 (GCA_000427625.1) | 5029135 | 4 | 4571 | 49 | 3 | 3 | 3 | 51.1 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 99.4 | 0.14 |
| M. marinus A45T (GCA_000383855.1) | 4988792 | 2 | 4486 | 50 | 3 | 3 | 3 | 52.7 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 98.5 | 1.58 |
| M. whittenburyi BBA5.1 (GCA_000746145.1) | 5074273 | 88 | 4567 | 43 | 3 | 1 | 1 | 52.2 | pmoCAB (pxmABC) | mxaFIJGACKLD, xoxF | nifDKH | 98.81 | 1.28 |
| Ca. M. coli BlB1 (GCA_015476545.1) | 4865836 | 227 | 4397 | 40 | 1 | 1 | 1 | 51.3 | pmoCAB | mxaFIJGACKLD, xoxF | nifDKH | 99.55 | 0.78 |
| Ca. M. favarea B2 (GCA_902806695.1) | 4073239 | 134 | 3783 | 36 | nd | nd | nd | 47.2 | pmoCAB | mxaFJD, xoxF | nifDKH | 99.21 | 0.34 |
(1) pmoCAB=particulate methane monooxygenase, (2) mxaFIJGACKLD=calcium-dependent methanol dehydrogenase, (3) xoxF=lanthanide-dependent methanol dehydrogenase, (4) nitrogenase, (5) pxmABC=a sequence divergent particulate monooxygenase with currently unknown function and (6) mmoXYZBCD=soluble methane monooxygenase.