TABLE 4.
Analysis of relapse stratified by molecular subtypes and genetic alterations.
| Relapse | p-value | |||
|---|---|---|---|---|
| No; n = 27 | Yes; n = 5 | |||
| Follow-up time median (IQR) | 31 (25–35) | 34 (16–50) | 0.70 a | |
| Molecular subtype b | 0.24 c | |||
| Genetic alteration(s) | ||||
| Hyperdiploid | ABHD17B::CEMIP2 d | 1 (3.7%) | 0 (0.0%) | |
| CSF3R p.G147R + DBF4B::EFTUD2 d | 1 (3.7%) | 0 (0.0%) | ||
| FLT3 p.N676K | 1 (3.7%) | 0 (0.0%) | ||
| FLT3 p.D835E + R833-D834_Ins:S | 1 (3.7%) | 0 (0.0%) | ||
| Hyperdiploid | 6 (22.2%) | 0 (0.0%) | ||
| NRAS p.G12D + PAX5 p.R38C | 1 (3.7%) | 0 (0.0%) | ||
| NF1 p.R1306* + CREBBP p.G1542V | 0 (0.0%) | 1 (20.0%) | ||
| DUX4 e + TP53 p.R267P + IKZF1 p.D186Y | 0 (0.0%) | 1 (20.0%) | ||
| total | 11 (40.7%) | 2 (40.0%) | ||
| ETV6::RUNX1 | ETV6::RUNX1 | 2 (7.4%) | 0 (0.0%) | |
| ETV6::RUNX1 + ATM p.P604S | 1 (3.7%) | 0 (0.0%) | ||
| total | 3 (11.1%) | 0 (0.0%) | ||
| ETV6::RUNX1-like | NSD2 p.E1099K | 0 (0.0%) | 1 (20.0%) | |
| TCF3:FLI1 + SCAF8::FER1L4 d | 1 (3.7%) | 0 (0.0%) | ||
| total | 1 (3.7%) | 1 (20.0%) | ||
| Ph-like | KRAS p.Q61P | 1 (3.7%) | 0 (0.0%) | |
| Ph-like | 1 (3.7%) | 0 (0.0%) | ||
| P2RY8::CRLF2 | 1 (3.7%) | 0 (0.0%) | ||
| total | 3 (11.1%) | 0 (0.0%) | ||
| PAX5alt | NRAS p.G12S + PAX5 p.P34L | 0 (0.0%) | 1 (20.0%) | |
| PAX5::ETV6 | 1 (3.7%) | 0 (0.0%) | ||
| total | 1 (3.7%) | 1 (20.0%) | ||
| DUX4 | DUX4 | 1 (3.7%) | 0 (0.0%) | |
| DUX4::IGH + PTPN11 p.D61Y + TP53 p.P152L + ZEB2 p.H1038R | 1 (3.7%) | 0 (0.0%) | ||
| DUX4 p.I65N + ETV6_Q12del | 1 (3.7%) | 0 (0.0%) | ||
| ERG::LINC01423 | 1 (3.7%) | 0 (0.0%) | ||
| total | 4 (14.8%) | 0 (0.0%) | ||
| MEF2D | MEF2D::BCL9 + ATM p.P604S | 0 (0.0%) | 1 (20.0%) | |
| TCF3::PBX1 | TCF3::PBX1 + TCF3_S338fs*10 | 1 (3.7%) | 0 (0.0%) | |
| ZNF384 | EP300::ZNF384 | 1 (3.7%) | 0 (0.0%) | |
| B-other | Unclassified | 2 (7.4%) | 0 (0.0%) | |
Wilcoxon rank sum test.
Final classification.
Fisher’s exact test (by molecular subtype).
Classified as DUX4/Hyperdiploid.
Novel fusion transcripts.
In bold are depicted the high-risk alterations identified in patients initially classified as intermediate-risk according to the protocol guidelines.