Table 1.
Primer
|
Sequence (5′-3′) | ||
---|---|---|---|
Gene | Typea | Designation | |
Primers used for RT and RACE-PCR | |||
mcyA | R2 | PMR2 | CTA GAG TAG TTA CTG GAT CTA |
mcyB | R2 | mcyBpR2 | AAC CCT TGT TGA CGC TCT GT |
mcyC | R2 | Elke10 | CTG CCA AGA GTT CAG CAT CT |
mcyD | R2 | Topaz4 | TTG TTG CCA TTC CTG CAT |
mcyE | R2 | mcyEpR2 | CGT AAA CCT TCA GGG CAT GA |
mcyF | R2 | mcyFpR2 | TGC AGC CTT CCT GAA ATA ATT |
mcyG | R2 | mcyGpR2 | AGC AGT CAT GGA CAG AAT ATT |
mcyH | R2 | Ebony5 | GAC GCT CAA CAT AAC TGG AA |
mcyI | R2 | mcyIpR2 | GTT GCA TCT GAT TGC GAA TTA |
mcyJ | R2 | mcyJpR2 | AAT CCG CTA CAG CCA ACC TT |
Primers used for RACE-PCR and RT-PCR | |||
mcyA | R1 | Promi5R | GGT AAT CTA TTG AAA CCA GAT G |
mcyB | R1 | mcyBpR | CGA GTG ACG CTC TAC AAC TT |
mcyC | R1 | mcyCpR | CCA GTT CTT GAA AGG CTG CT |
mcyD | R1a | MpR60R | TTT GTT GAG ACT CGA AAG CTT TTA |
mcyD | R1b | MpR15R | GTT TTC GGA TAA GTT CTT TTT ATC |
mcyE | R1 | mcyER | GAC TTC CAC TAT AGC ATC AAG |
mcyF | R1 | mcyFR | CTA TCA ATA GAA CCT GTG CGA |
mcyG | R1 | mcyGR | ACA AGC CCA TAG TGC GGG AAT |
mcyH | R1 | abcpR | TCT CAG AAA CTT AGA GGC ATT |
mcyI | R1 | Ebony3 | GCC TCA TTA ATT TCC TCC GGT |
mcyJ | R1 | mcyJpR | TGA TCT CCG GCT TTA AGT TC |
Primers used for RT-PCR | |||
mcyB | F | Ruby43 | CGG TTA TTT TGC GAC TCC |
mcyC | F | Elke12 | GAA AAA TTC ATC GTC AAG CT |
mcyE | F | mcyDF | GTC TGT CTC TAT AGA TGA ACG |
mcyF | F | mcyEF | GAT CTG GCC TTG GAC GGA ATT |
mcyG | F | mcyFF | TTG ACC ATC GCA CCT CTA TCA |
mcyH | F | abcpF | GAC TTT CCT AAT ATT AGA CGC |
mcyI | F | mcyIpF | CTC CCT TAG AAC AAT TTC TCT |
mcyJ | F | mcyJpF | GAG CAA CTT TGC TCA AAG ATT |
Primers used for RACE ligation and RACE-PCR | |||
DT89 | CGC CAT TTC CAC CTT CTC TTC | ||
DT88 | GAA GAG AAG GTG GAA ATG GCG TTT TGG |
R, reverse primer (R1 is upstream of R2; R1a and R1b were used interchangeably, leading to the same results); F, forward primer.