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. 2025 Dec 3;15:43077. doi: 10.1038/s41598-025-27058-x

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© The Author(s) 2025

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Fig. 4 — Distribution of differentially expressed genes (DEGs) and differential DNA methylation (August compared with June). (A). Venn diagram of DEGs and genes with differentially methylated regions (DMRs). (B). Circos plot of kiwifruit chromosomes showing density of annotated genes, DEGs and DMRs in CG, CHG, and CHH contexts across the entire genome. C. Statistical analysis (t-test) of methylation difference of DEGs grouped by DMR location. Diamond symbol indicates mean value of the methylation difference. Dashed lines indicate the cutoff value of differential methylation (± 25%).