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. 2025 Dec 3;15:43077. doi: 10.1038/s41598-025-27058-x

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© The Author(s) 2025

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Fig. 6 — TE activity in association with genes involving in TE silencing. (A). Average methylation level of the 2-kb flanking regions and TE annotation regions (from 5’ to 3’ annotation boundaries) of all annotated TE loci in kiwifruit dormant buds (June; JUN) and at growth resumption (August; AUG). (B). Heatmap of the log₂fold-change (log₂FC) and scaled expression level (JUN1-3 and AUG1-3) of TE superfamilies. TEs that were significantly downregulated in August compared with June are labelled with stars (*). (C). Heatmap of the log₂fold-change (log₂FC) and scaled expression level (JUN1-3 and AUG1-3) of genes participating in chromatin remodeling, PTGS, and RdDM pathways. Genes that were significantly upregulated in August compared with June are labelled with stars (*).