Table 1.
Summary of predicted repeat sequences in the O. corvina genome, including the number of elements, their total length (bp), and their proportion (%) of the genome
| Type | Number | Length (bp) | Percentage (%) |
|---|---|---|---|
| ClassI | 161 | 203,372 | 0.93 |
| ClassI/LINE | 55 | 160,052 | 0.73 |
| ClassI/LTR | 3 | 465 | 0.00 |
| ClassI/LTR/Copia | 11 | 779 | 0.00 |
| ClassI/LTR/Gypsy | 90 | 42,214 | 0.19 |
| ClassI/PLE|LARD | 2 | 175 | 0.00 |
| ClassII | 55 | 14,548 | 0.07 |
| ClassII/Crypton | 4 | 480 | 0.00 |
| ClassII/Helitron | 2 | 122 | 0.00 |
| ClassII/MITE | 22 | 10,126 | 0.05 |
| ClassII/TIR | 21 | 3,376 | 0.02 |
| ClassII/Unknown | 6 | 499 | 0.00 |
| SSR | 147 | 240,272 | 1.10 |
| Unknown | 351 | 307,127 | 1.41 |
| Total | 363 | 702,375 | 3.22 |
Repeats are classified hierarchically as Class/Superfamily/Family. The first term indicates the transposon class (Class I = retrotransposon, Class II = DNA transposon), the second term indicates the superfamily, and the third term indicates the specific family. Abbreviations: Long Interspersed Nuclear Elements; LTR, Long Terminal Repeats; PLE, Penelope-like elements; MITE, Miniature Inverted-repeat Transposable Elements; TIR, Terminal Inverted Repeats