PD	Parkinson’s disease
cfDNA	Cell-free DNA
cf-ntDNA	Nuclear derived cell-free DNA
cf-mtDNA	Mitochondrially derived cell-free DNA
CSF	Cerebrospinal fluid
LBs	Lewy bodies
SN	Substantia nigra
LRRK2	Leucine rich repeat kinase 2
CAD	Caspase-activated DNase
dsDNA	Double-stranded DNA
NETs	Neutrophil extracellular traps
ROS	Reactive oxygen species
AD	Alzheimer’s disease
RNA	Ribonucleic acids
ASO	Antisense oligonucleotide
EVs	Extracellular vesicle
DAMPs	Damage-Associated Molecular Patterns
tRNA	Transfer RNA
rRNA	Ribosomal RNA
ER	Endoplasmic reticulum
FIS1	Mitochondrial fission protein 1
DRP1	Dynamic-related protein 1
MFN1/2	Mitofusion proteins 1 and 2
LIR	LC3 interacting region
PINK1	PTEN-induced putative kinase 1
PTEN	Phosphatase and tensin homologue deleted on chromosome 10
TOM	Translocase of the outer membrane
TIM	Translocase of the inner membrane
PARL	Presenilin-associated rhomboid-like protein
OMM	Outer mitochondrial membrane
OPTN	Optineurin
NDP52	Nuclear dot protein 52
CALCOCO2	Calcium-binding and coiled-coil domain-containing protein 2
MDVs	Mitochondrially derived vesicles
cGAS	Cyclic GMP/AMP synthase
cGAMP	Cyclic guanosine monophosphate–adenosine monophosphate
STING	Stimulator of interferon genes
TCA	Tricarboxylic acid cycle
PRRs	Pattern recognition receptors
TLRs	Toll-like receptors
NOD	Nucleotide-binding oligomerization domain
NLRs	Nucleotide-binding oligomerization domain like receptors
HD	Huntington’s disease
ALS	Amyotrophic lateral sclerosis
MS	Multiple sclerosis
IRF3	Interferon regulatory factor 3
IKK	IkappaB kinase
TBK1	TANK-binding kinase 1
qPCR	Quantitatively polymerase chain reaction
PCR	Polymerase chain reaction
NGS	Next Generation Sequencing
TNF	Tumor necrosis factor
IFNɣ	Interferon gamma
IL-6	Interleukin 6