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. Author manuscript; available in PMC: 2025 Dec 13.
Published in final edited form as: Nat Protoc. 2024 Dec 15;20(6):1546–1583. doi: 10.1038/s41596-024-01090-z
Steps 1–19,  Cloning guide RNAs: 4d
Steps 20–29, Cloning custom payload into acceptor plasmid: optional): 4d
Steps 30–46,  Transfection of atgRNA combinations: 3d
Steps 47–61,  Reading out attB insertion by 2-primer NGS: 2d
Steps 63–65,  Transfection with payload plasmid: 3d
Steps 66–67, 3-primer NGS assay: 2d
Steps 68–73, Analysis of NGS: 1d
Steps 74–91,  Assessing payload integration by ddPCR: 1–2d
Box 3, Production of in vitro transcribed PASTE mRNA: optional): 1d