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. Author manuscript; available in PMC: 2025 Dec 13.
Published in final edited form as: Nat Protoc. 2024 Dec 15;20(6):1546–1583. doi: 10.1038/s41596-024-01090-z

Table 2.

Second round NGS barcode primers

NGS round 2 PCR forward primers Step
NGS_96_F_A1 AATGATACGGCGACCACCGAGATCTACACAAGTAGAGACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A2 AATGATACGGCGACCACCGAGATCTACACCATGCTTAACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A3 AATGATACGGCGACCACCGAGATCTACACGCACATCTACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A4 AATGATACGGCGACCACCGAGATCTACACTGCTCGACACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A5 AATGATACGGCGACCACCGAGATCTACACAGCAATTCACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A6 AATGATACGGCGACCACCGAGATCTACACAGTTGCTTACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A7 AATGATACGGCGACCACCGAGATCTACACCCAGTTAGACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A8 AATGATACGGCGACCACCGAGATCTACACTTGAGCCTACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A9 AATGATACGGCGACCACCGAGATCTACACACACGATCACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A10 AATGATACGGCGACCACCGAGATCTACACGGTCCAGAACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A11 AATGATACGGCGACCACCGAGATCTACACGTATAACAACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS_96_F_A12 AATGATACGGCGACCACCGAGATCTACACTTCGCTGAACACTCTTTCCCTACACGACGCTCTTCC 53, 67
NGS round 2 PCR reverse primers:
NGS_96_R_E1 CAAGCAGAAGACGGCATACGAGATCATGATCGGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E2 CAAGCAGAAGACGGCATACGAGATAGGATCTAGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E3 CAAGCAGAAGACGGCATACGAGATGACAGTAAGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E4 CAAGCAGAAGACGGCATACGAGATCCTATGCCGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E5 CAAGCAGAAGACGGCATACGAGATTCGCCTTGGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E6 CAAGCAGAAGACGGCATACGAGATATAGCGTCGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E7 CAAGCAGAAGACGGCATACGAGATGAAGAAGTGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67
NGS_96_R_E8 CAAGCAGAAGACGGCATACGAGATATTCTAGGGTGACTGGAGTTCAGACGTGTGCTCTTC 53, 67