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. 2005 Oct 27;33(18):6057–6069. doi: 10.1093/nar/gki911

Figure 5.

Figure 5

Examples of good and poor conformational energy landscapes. The good landscape is represented by candidate sequence 32 (black filled circles, shaded) and the poor landscape by candidate sequence 33/34 (red, diamonds) for the neomycin B antibiotic. The good candidate sequence exhibits a sharp, steep slope while the poor candidate sequence has multiple low-energy minima. The optimal and suboptimal structures are generated using the Vienna RNA Package.