TABLE 3.
Conservation of lysine catabolic genes among Pseudomonas species
| Gene name | Protein function | % of similarity to P. putida KT2440a
|
||
|---|---|---|---|---|
| P. aeruginosa PAO1 | P. syringae sv.syringae | P. fluorescens PfO-1 | ||
| davD (PP0213) | Glutaric semialdehyde dehydrogenase | 91 (PA0265) | 91 (PSPTO0300) | 91 (PflO2004773) |
| davT (PP214) | δ-Aminovalerate aminotransferase | 89 (PA0266) | 92 (PSPTO0301) | 92 (PflO2004774) |
| davB (PP0383) | Lysine monooxygenase | None | 91 (PSPTO0518) | 91 (PflO2005316) |
| davA (PP0382) | δ-Aminovaleramide amidohydrolase | None | 75 (PSPTO0517) | 73 (PflO2005317) |
| amaA (PP5257) | l-Pipecolate oxidase | 86 (PA1027) | 90 (PSPTO1891) | 84 (PflO2000241) |
| amaB (PP5258) | Δ1-Piperideine-6-carboxylate dehydrogenase | 79 (PA1028) | 73 (PSPTO1892) | 75 (PluO2000242) |
| cadA (PP4140) | Lysine decarboxylase | 88 (PA1818) | None | 90 (PluO2001874) |
| Periplasmic protein (PP0282) | Amino acid ABC transporter | 86 (PA5153) | 82 (PSPTO5358) | 62 (PfluO2003365) |
| Periplasmic protein (PP4486) | Basic amino acid ABC transporter | 94 (PA0892) | 92 (PSPTO1830) | 92 (PfluO2003361) |
a
The number in parentheses refers to the corresponding polypeptide number deduced from the annotated genome sequences of P. aeruginosa, P. syringae, and P. fluorescens.