TABLE 3.
Characteristics of perfect PIP boxes in the chromosome of X. campestris pv. vesicatoria strain 85-10
| Positiona | Distanceb | Gene | Gene product |
|---|---|---|---|
| 821742 | 119 | pgl | Polygalacturonase |
| 569831 | 153 | trpE | Anthranilate synthase component I |
| 532702 | 43 | avrRxvc | Avirulence protein AvrRxv |
| 490643 | 130 | xopAd | Xanthomonas outer protein A |
| 477427 | 81 | hrpB1d | HrpB1 protein |
| 477412 | 69 | hrcUd | HrcU protein |
| 475194 | 855 | hpaCd | HpaC protein |
| 473817 | 248 | hrcQd | HrcQ protein |
| 470920 | 917 | hrpD6d | HrpD6 protein |
| 362283 | 945 | gatA | Glu-tRNAGln amidotransferase A subunit |
| 244787 | 719 | XCV0208 | Putative secreted protein |
| 62238 | 64 | avrBs2 | Avirulence protein AvrBs2 |
| 5169633 | 191 | XCV4480 | TonB-dependent outer membrane receptor (C-terminal fragment) |
| 5020263 | 942 | XCV4364 | Xylosidase |
| 4824118 | 922 | yapH | Filamentous hemagglutinin-related protein |
| 3910091 | 62 | XCV3425 | Predicted aminopeptidase |
| 3634784 | 713 | gcvH | Glycine cleavage H protein |
| 3191886 | 273 | XCV2805 | IS1477 transposase |
| 2894866 | 229 | XCV2568 | Putative secreted protein |
| 2568565 | 140 | pgl | 6-Phosphogluconolactonase |
| 2088821 | 976 | XCV1851 | ISXccl transposase |
| 1631628 | 349 | XCV1453 | Conserved hypothetical protein |
| 1371078 | 158 | dnaE1 | DNA polymerase III alpha chain protein |
a
Position of the first bp of the PIP box (TTCGC-N15-TTCGC) within the chromosomal sequence. PIP boxes in antisense direction and more than 1,000 bp distant from a CDS start were excluded.
b
Distance in base pairs between the end of the PIP box and the start codon.
c
AvrRxv is not regulated by HrpG (23).