| PCGs | Protein-coding genes |
| tRNA | Transfer RNA |
| rRNA | RibosomalRNA |
| RSCU | Relative synonymous codon usage |
| ML | Maximum likelihood |
| BI | Bayesian inference |
| DHU | Dihydrouridine |
| D-loop | Non-coding control region |
| TAS | Termination-associated sequence |
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