A. baumannii	Acinetobacter baumannii
ACEP	Antimicrobial Peptide Recognition
ADAM	A Database of Anti-Microbial Peptides
AI	Artificial Intelligence
AMPs	Antimicrobial Peptides
AMR	Antimicrobial Resistance
AMPDB V1	Anti-Microbial Peptide Database Version 1
ANNs	Artificial Neural Networks
APD-3	Antimicrobial Peptide Database-3
ATT	Attention Mechanism
AUROC	Area Under the Curve
B-AMP	Biofilm-AMP
BERT	Bidirectional Encoder Representations from Transformers
Bi-LSTM	Bi-directional Long Short-Term Memory
CAMP	Collection of Anti-Microbial Peptides
CNN	Convolutional Neural Network
DA	Discriminant Analysis
dbAMP	Database of Antimicrobial Peptides
DBAASP	Database of Antimicrobial/Cytotoxic Activity and Structure of Peptides
DF	Deep Forest
DL	Deep Learning
DPL	Database of Peptide Ligands
DRAMP	Data Repository of Antimicrobial Peptides
E. coli	Escherichia coli
ECE	Expected Calibration Error
ESM	Evolutionary Scale Modeling
FBGAN	Featurized Bidirectional Generative Adversarial Networks
GANs	Generative Adversarial Networks
GCN	Graph Convolutional Networks
GNN	Graph Neural Network
GRU	Gated Recurrent Unit
GRAMPA	Giant Repository of AMP Activities
GPT-3	Generative Pre-trained Transformer-3
IAMPE	Integrated Antimicrobial Peptide Estimator
InverPep	Invertebrate Peptides Database
KL	Kullback–Leibler
kNNs	k-Nearest Neighbours
K. pneumoniae	Klebsiella pneumoniae
LAMP2	Linking Antimicrobial Peptides-2
LGBM	Light Gradient-Boosting Machine
LLMs	Large Language Models
LSTM	Long Short-Term Memory
MCC	Matthews Correlation Coefficient
MIC	Minimum Inhibitory Concentration
MLP	Multi-Layer Perception
ML	Machine Learning
modlAMP	Molecular Design Laboratory’s Antimicrobial Peptides
MRSA	Methicillin-Resistant Staph. aureus
MSA	Multiple Sequence Alignments
NLP	Natural Language Processing
NSGA-II	Non-Dominated Sorting Genetic Algorithm-II
P. aeruginosa	Pseudomonas aeruginosa
PGAT-ABPp	Position-aware Graph Attention for Antibacterial Peptides
PSEAAC	Pseudo Amino Acid Composition
QSVM	Quantum Support Vector Machine
RF	Random Forest
RMSE	Root Mean Square Error
RNN	Recurrent Neural Network
S. aureus	Staph. aureus
SAR	Structure–Activity Relationships
SVM	Support Vector Machine
StAPD	Stability-Aware Peptide Database
VAEs	Variational Autoencoders
YADAMP	Yet Another Database of Antimicrobial Peptides