AMPK	AMP-activated protein kinase
mTORC1	Mechanistic target of rapamycin complex 1
AD	Alzheimer’s disease
PD	Parkinson’s disease
ILV	Intraluminal vesicle
RAB5	Ras-related protein in brain 5
RAB7	Ras-related protein in brain 7
VAMP7	Vesicle-associated membrane protein 7
BORC	BLOC-1-Related Complex
HOPS	Homotypic fusion and protein sorting
LYST	Lysosomal trafficking regulator
TFEB	Transcription factor EB
TFE3	Transcription factor E3
CMA	Chaperone-mediated autophagy
BEACH	Beige and Chediak-Higashi domain
LSD	Lysosomal storage disorder
MCOLN1	Mucolipin-1
TRPML1	Transient receptor potential mucolipin 1
IP3	Inositol Trisphosphate
IP3R	Inositol triphosphate receptor
RYR	Ryanodine receptor
MVB	Multivesicular body
TEM	Transmission electron microscopy
CLEM	Correlated light and electron microscopy
SBEM	Serial block-face electron microscopy
FIB-SEM	Focused ion beam scanning electron microscopy
LAMP1	Lysosomal-associated membrane protein 1
BSA	Bovine serum albumin
ARGO	Analysis of red-green offset
GFP	Green fluorescent protein
GCaMP	Genetically encoded calcium indicator
LMP	Lysosomal membrane permeabilization
NMJ	Neuromuscular junction
CA	Cornu ammonis
PFC	Prefrontal cortex
LAMP2A	Lysosomal-associated membrane protein 2A
ROS	Reactive oxidative species
EC-SOD	Extracellular superoxide dismutase
AGE	Advanced glycation end-products
DIV	Days in vitro
LLOME	L-leucyl-L-leucine O-methyl ester
SNT	Synaptotagmin
SNG	Synaptogyrin
Aβ	Beta-amyloid
STING	Stimulator of interferon genes
NPC	Niemann–Pick type C
POMC	Proopiomelanocortin
ATG8	Autophagy-related protein 8
ER	Endoplasmic reticulum
ERK2	Extracellular signal-regulated kinase 2
PP2A	Protein phosphatase 2A
STAT3	Signal transducer and activator of transcription 3
MYC	Myelocytomatosis oncogene
CARM1	Coactivator-associated arginine methyltransferase 1
BNIP3	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3
ESCRT	Endosomal sorting complexes required for transport
PITT	Phosphoinositide-initiated tethering and lipid transport
CASM	Conjugation of ATG8 to single membranes