| 95% CI | 95% confidence interval |
| AIDS | acquired immunodeficiency syndrome |
| cART | combination antiretroviral therapy |
| Ct | cycle threshold |
| DNA | desoxyribonucleic acid |
| EAEC | enteroaggregative Escherichia coli |
| EIEC | enteroinvasive Escherichia coli |
| EPEC | enteropathogenic Escherichia coli |
| ETEC | enterotoxigenic Escherichia coli |
| HIV | human immunodeficiency virus |
| IQR | inter-quartile range |
| min. | minute |
| µL | microliter |
| N | number |
| NA | not applicable |
| PCA | principal component analysis |
| PCR | polymerase chain reaction |
| PLWH | people-living-with-HIV |
| SD | standard deviation |
| sec. | second |
| SES | socio-economic status |
| spp. | species (plural) |