TABLE 2.
Colony blot hybridization of 32 probes derived from subtractive hybridization with a panel of E. coli strains
| Straina | Serotype | Hybridizationb with colony blot pattern (fragment[s]):
|
|||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A (S-1) | B (S-2, S-10, S-30) | C (S-3, S-4, S-27, S-31) | D (S-5, S-25) | E (S-6) | F (S-7) | G (S-8) | H (S-9) | I (S-11) | J (S-12, S-13, S-14, S-15, S-32) | K (S-16) | L (S-17) | M (S-18) | N (S-19, S-20, S-21) | O (S-22) | P (S-23) | Q (S-24) | R (S-26) | S (S-28) | T (S-29) | ||
| NV32 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | |||
| NV74 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | |||
| NV127 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| NV197 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | |||
| NV200 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | ||
| CH014 | O91:H21 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| CH013 | O91:H10 | + | + | + | + | + | + | + | |||||||||||||
| CH015 | OR:H16 | + | + | + | + | + | + | + | + | + | + | + | + | ||||||||
| CH016 | Ox3:H− | + | + | + | + | + | + | + | + | + | + | + | + | + | + | ||||||
| CH017 | Ont:H− | + | + | + | + | + | + | + | + | + | + | ||||||||||
| CH087 | O103:H2 | + | + | + | + | + | + | + | + | + | + | + | |||||||||
| EDL933 | O157:H7 | + | + | + | + | + | + | + | + | + | |||||||||||
| EPEC E2348/69 | O127:H6 | + | + | + | + | + | + | ||||||||||||||
The NV strains are from animal or food origins (Table 1), and the CH strains are of hemolytic-uremic syndrome origin.
No hybridization to DNA from five O6:H10 STEC strains or from strain DH5α was observed. Fragments are named S-1 to S-32. +, positive hybridization signal.