TABLE 2.
16S rRNA sequencing results for a Montastrea cavernosa colony from the back reef at Playa Kalkia
| ID% | No. of similar clones | No. of base pairs sequenced | Best-matched organism | Accession no. | Division | Location of Cloneb
|
|||
|---|---|---|---|---|---|---|---|---|---|
| SW | HC | BBD | DC | ||||||
| 98 | 2 | 594 | Uncultured bacterium SAR102 | L35460 | α-Proteobacteria | × | |||
| 94-98 | 2 | 534 | Uncultured bacterium OCS126 | AF001638 | α-Proteobacteria | × | |||
| 91 | 1 | 543 | Caedibacter caryophilus | AJ238683 | α-Proteobacteria | × | |||
| 92 | 1 | 573 | Olavius loisae endosymbiont 2 | AF104473 | α-Proteobacteria | × | |||
| 99 | 1 | 596 | Uncultured Roseobacter NAC11-1 | AF245630 | α-Proteobacteria | × | |||
| 98 | 1 | 610 | Uncultured bacterium EBAC31A08 | AF268219 | δ-Proteobacteria | × | |||
| 92 | 1 | 334 | Uncultured bacterium CHAB-II-49 | AJ240909 | δ-Proteobacteria | × | |||
| 98-99 | 2 | 546 | Unknown marine bacterioplankton SAR7 | X52171 | δ-Proteobacteria | × | |||
| 94 | 2 | 587 | Unidentified marine bacterium OM60 | U70696 | γ-Proteobacteria | × | |||
| 98-99 | 9 | 587 | Prochlorococcus sp. strain MIT9202 | AF115269 | Cyanobacteria | × | |||
| 98 | 3 | 546 | Uncultured Synechococcus sp. strain NAC1-5 | AF245618 | Cyanobacteria | × | |||
| 96 | 1 | 454 | Prochlorococcus marinus pastori | AF180967 | Cyanobacteria | × | |||
| 99 | 1 | 603 | Prochlorococcus sp. strain MIT9312 | AF053398 | Cyanobacteria | × | |||
| 99 | 1 | 602 | Synechococcus WH8101 | AF001480 | Cyanobacteria | × | |||
| 92 | 2 | 675 | Uncultured Cytophagales CRE-FL75 | AF141488 | CFB | × | |||
| 93 | 1 | 688 | Marine psychrophile sp. SW17 | AF001368 | CFB | × | |||
| 93 | 1 | 645 | Uncultured marine bacterium ZD0403 | AJ400347 | CFB | × | |||
| 99 | 1 | 588 | Unidentified cytophagales OM188 | U70687 | CFB | × | |||
| 94 | 1 | 601 | Unidentified planctomycete OM190 | U70712 | Planctomycetales | × | |||
| 98 | 1 | 567 | Unidentified bacterium isolate HRV16 | Z88588 | Unknown | × | |||
| 95 | 12 | 564 | Unidentified beta proteobacterium OPB30 | AF026979 | β-Proteobacteria | × | |||
| 94 | 6 | 558 | Hydrogenophilus thermoluteolus TH-4 | AB009829 | β-Proteobacteria | × | |||
| 95 | 1 | 478 | Unidentified beta proteobacterium OPS140 | AF026983 | β-Proteobacteria | × | |||
| 95-96 | 2 | 664 | Uncultured epsilon proteobacterium KTc1160 | AF235116 | ɛ-Proteobacteria | × | |||
| 98-99 | 34 | 539 | Chromatium sp. RW | AF384210 | γ-Proteobacteria | × | |||
| 99 | 1 | 406 | Escherichia coli K12 MG1655 | AE000345 | γ-Proteobacteria | × | |||
| 95 | 1 | 527 | Uncultured alpha proteobacterium SIC.926 | AF277517 | α-Proteobacteria | × | |||
| 99 | 1 | 583 | Uncultured proteobacterium clone CD5H5 | AY038412 | α-Proteobacteria | × | |||
| 93 | 1 | 588 | Maricaulis sp. strain MCS18 | AJ227806 | α-Proteobacteria | × | |||
| 94 | 1 | 607 | Uncultured alpha proteobacterium KTc0993 | AF235129 | α-Proteobacteria | × | |||
| 95 | 1 | 583 | Uncultured proteobacterium clone CD4D6 | AY038529 | δ-Proteobacteria | × | |||
| 99 | 2 | 515 | Desulfovibrio sp. strain TBP-1 | AF090830 | δ-Proteobacteria | × | × | ||
| 98 | 1 | 582 | Uncultured proteobacterium clone CD5B11 | AY038410 | ɛ-Proteobacteria | × | |||
| 96 | 1 | 321 | Shewanella sp. clone NB65-G | AB013842 | γ-Proteobacteria | × | |||
| 93 | 1 | 606 | Marinobacter hydrocarbonoclasticus | Y18240 | γ-Proteobacteria | × | |||
| 99 | 1 | 566 | Pseudomonas stutzeri | AY017341 | γ-Proteobacteria | × | |||
| 93-94 | 2 | 443 | Uncultured gamma proteobacterium clone 26 | AF369718 | γ-Proteobacteria | × | |||
| 96 | 1 | 542 | Unidentified proteobacterium strain NKB4 | AB013256 | γ-Proteobacteria | × | |||
| 92 | 2 | 616 | Oceanospirillum linum | M22365 | γ-Proteobacteria | × | |||
| 88 | 1 | 530 | Marine bacterium BBFL7 | AY028207 | CFB | × | |||
| 99 | 1 | 630 | Uncultured Cytophagales clone CD4B12 | AY038511 | CFB | × | |||
| 92 | 1 | 597 | Parasporobacterium paucivorans sp. SYR1 | AJ272036 | Firmicutes | × | |||
| 92-95 | 2 | 478 | Spirochaeta litoralis | M88723 | Spirochaetales | × | × | ||
| 91 | 1 | 220 | Uncultured rumen bacterium 4C3d-12 | AB034093 | Unknown | × | |||
| 91 | 1 | 612 | Unidentified butyrate-producing L1-92 | AJ270487 | Unknown | × | |||
| 97 | 1 | 613 | Uncultured Crater Lake bacterium CL0-45 | AF316686 | Unknown | × | |||
| 98 | 2 | 435 | Silicibacter lacuscaerulensis | U77644 | α-Proteobacteria | × | |||
| 97 | 1 | 489 | Alpha proteobacterium MBIc1876 | AB026194 | α-Proteobacteria | × | |||
| 88 | 1 | 489 | Uncultured alpha proteobacterium MB13E08 | AY033327 | α-Proteobacteria | × | |||
| 95 | 2 | 497 | Caulobacter sp. strain MCS33 | AJ227811 | α-Proteobacteria | × | |||
| 96 | 1 | 341 | Uncultured Rhodobacter CtaxPhil-16 | AF259624 | α-Proteobacteria | × | |||
| 97 | 1 | 477 | Agrobacterium gelatinovorum | D88523 | α-Proteobacteria | × | |||
| 95 | 1 | 342 | Uncultured alpha proteobacterium CHAB-I-5 | AJ240910 | α-Proteobacteria | × | |||
| 97 | 1 | 373 | Sulfitobacter pontiacus | AF182018 | α-Proteobacteria | × | |||
| 90 | 1 | 399 | Uncultured ferromanganous bacterium MND | AF292999 | α-Proteobacteria | × | |||
| 99 | 1 | 333 | Beta proteobacterium OS-ac-15 | U46749 | β-Proteobacteria | × | |||
| 87 | 1 | 296 | Desulfovibrio zosterae | Y18049 | δ-Proteobacteria | × | |||
| 90-91 | 2 | 555 | Desulfocella halophila | AF022936 | δ-Proteobacteria | × | |||
| 91 | 1 | 425 | Delta proteobacterium S2551 | AF177428 | δ-Proteobacteria | × | |||
| 89 | 1 | 302 | Desulfovibrio alaskensis NCIMB13491 | Y11984 | δ-Proteobacteria | × | |||
| 87 | 1 | 462 | Uncultured delta proteobacterium Sva0447 | AJ240999 | δ-Proteobacteria | × | |||
| 92 | 1 | 535 | Desulfofrigus oceanense strain ASv26 | AF099064 | δ-Proteobacteria | × | |||
| 96 | 1 | 371 | Desulfobotulus sp. strain BG14 | U85470 | δ-Proteobacteria | × | |||
| 94 | 2 | 525-567 | Desulfovibrio aespoeensis (isolate Aspo2) | X95230 | δ-Proteobacteria | × | × | ||
| 95 | 1 | 546 | North Sea bacterium H120 | AF069667 | Unknown | × | |||
| 88 | 1 | 626 | Unidentified bacterium strain BD2-14 | AB015542 | Unknown | × | |||
| 93 | 1 | 544 | Bacterium strain 77003 | AF227847 | Unknown | × | |||
| 90 | 1 | 356 | Marine snow bacterium Adriatic87 | AF030773 | Unknown | × | |||
| 94 | 1 | 568 | Uncultured bacterium PENDANT-24 | AF142936 | α-Proteobacteria | × | |||
| 99 | 1 | 338 | Escherichia coli K12 MG1655 | AE000345 | γ-Proteobacteria | × | |||
| 91 | 1 | 768 | Uncultured gamma proteobacterium CHAB-IV-34 | AJ240917 | γ-Proteobacteria | × | |||
| 93 | 1 | 297 | Uncultured gamma proteobacterium DSS65 | AJ401386 | γ-Proteobacteria | × | |||
| 94 | 1 | 355 | Uncultured gamma proteobacterium KTc119 | AF235120 | γ-Proteobacteria | × | |||
| 94 | 4 | 612 | Chlorobium vibrioforme | Y08103 | Green Sulfur Bacteria | × | |||
| 96 | 1 | 622 | Prosthecochloris aestuarii | AJ291826 | Green Sulfur Bacteria | × | |||
| 96 | 1 | 505 | Uncultured bacillariophyte AWS98-19b | AF327029 | Chloroplasts | × | |||
| 91 | 1 | 614 | Epulopiscium sp. morphotype B | M99574 | Firmicutes | × | |||
| 97-98 | 2 | 576 | Uncultured marine eubacterium HstpL78 | AF159652 | Unknown | × | |||
a
Abbreviations are as defined in footnote a to Table 1.
b
× signs indicate whether the clone occurred in the overlying seawater (SW), healthy coral tissue (HC), black band diseased coral tissue (BBD), or dead coral skeleton surfaces (DC).