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. 2005 Oct 25;102(44):15803–15808. doi: 10.1073/pnas.0505113102

Table 1. Steady-state kinetic efficiencies for single-nucleotide insertions by DNA Pol I (Klenow fragment, exonuclease-deficient) with variably sized template bases.

dNTP Template base Vmax, %·min–1 KM, μM Efficiency, Vmax/KM Relative efficiency
dATP H 0.90 ± 0.18 20 ± 2 4.5 × 104 3.5 × 10–3
F 24 ± 3 9.4 ± 2.9 2.6 × 105 2.0 × 10–1
L 27 ± 5 3.3 ± 2.8 8.2 × 106 6.5 × 10–1
B 12 ± 1 21 ± 5 5.7 × 105 4.4 × 10–2
I 1.3 ± 0.2 26 ± 11 5.0 × 104 3.8 × 10–3
T 24 ± 1 1.9 ± 0.5 1.3 × 107 1
dGTP H 0.025 ± 0.007 600 ± 210 4.2 × 101 3.2 × 10–6
F 0.0071 ± 0.0006 36 ± 12 2.0 × 102 1.5 × 10–5
L 0.029 ± 0.007 190 ± 90 1.5 × 102 1.2 × 10–5
B 0.023 ± 0.005 220 ± 100 1.0 × 102 7.7 × 10–6
I 0.017 ± 0.001 58 ± 18 2.9 × 102 2.2 × 10–5
T 0.41 ± 0.15 56 ± 34 7.3 × 103 5.6 × 10–4
dCTP H 0.031 ± 0.006 100 ± 60 3.1 × 102 2.4 × 10–5
F 0.071 ± 0.011 33 ± 11 2.2 × 103 1.7 × 10–4
L 0.021 ± 0.003 25 ± 13 8.4 × 102 6.5 × 10–5
B 0.038 ± 0.005 79 ± 33 4.8 × 102 3.7 × 10–5
I 0.036 ± 0.001 20 ± 8 1.8 × 103 1.4 × 10–4
T 0.022 ± 0.006 46 ± 28 4.8 × 102 3.7 × 10–5
dTTP H 0.062 ± 0.022 61 ± 37 1.0 × 103 7.7 × 10–5
F 0.12 ± 0.03 22 ± 13 5.5 × 103 4.2 × 10–4
L 0.13 ± 0.04 18 ± 18 7.2 × 103 5.5 × 10–4
B 0.20 ± 0.03 37 ± 12 5.4 × 103 4.2 × 10–4
I 0.085 ± 0.037 48 ± 39 1.8 × 103 1.4 × 10–4
T 0.012 ± 0.004 38 ± 38 3.2 × 102 2.5 × 10–5

The template contained variably sized thymidine analogs. The kinetics were measured in a buffer containing 5 mM template–primer DNA, 0.005 or 0.1 unit/ml enzyme, 50 mM Tris-HCl buffer (pH 7.5), 10 mM MgCl2, 1 mM dithiothreitol, and 50 mg/ml bovine serum albumin at 37°C. Vmax was normalized to the lowest enzyme concentration used. Relative efficiency is relative to insertion of dATP opposite T.