TABLE 2.
Association and dissociation rates for the IAS derivatives to the different enzyme-substrate complexes for wild-type RT and the Lys103Asn mutanta
| RT type and inhibitor | Rate for:
|
||||||||
|---|---|---|---|---|---|---|---|---|---|
| RT
|
RT/TP
|
RT/TP/dNTP
|
|||||||
| Ki (nM) | kon (s−1M−1) | koff (s−1) | Kibin (nM) | konbin (s−1M−1) | koffbin (s−1) | Kiter (nM) | konter (s−1M−1) | koffter (s−1) | |
| Wild-type RT | |||||||||
| RS1202 | 0.3 | (11 ± 1) × 105 | (4 ± 0.5) × 10−4 | 1.6 | (3 ± 0.5) × 105 | (5 ± 0.5) × 10−4 | 1.2 | (2 ± 0.3) × 105 | (3 ± 0.3) × 10−4 |
| RS1588 | 0.3 | (6 ± 0.5) × 105 | (2 ± 0.3) × 10−4 | 2.7 | (2 ± 0.5) × 105 | (6 ± 0.5) × 10−4 | n.d. | n.d. | n.d. |
| RS1866 | 2.2 | (4 ± 0.6) × 105 | (9 ± 1) × 10−4 | 2.3 | (3 ± 0.2) × 105 | (7 ± 1) × 10−4 | n.d. | n.d. | n.d. |
| RS1980 | 0.3 | (6 ± 0.5) × 105 | (2 ± 0.3) × 10−4 | 0.4 | (7 ± 0.5) × 105 | (3 ± 0.3) × 10−4 | 3 | (1 ± 0.3) × 105 | (3 ± 0.3) × 10−4 |
| EFV | 30 | (0.1 ± 0.02) × 105 | (4 ± 1) × 10−4 | .30 | (0.1 ± 0.02) × 105 | (4 ± 1) × 10−4 | 4 | (0.4 ± 0.02) × 105 | (1.6 ± 0.3) × 10−4 |
| NVP | 400 | (0.04 ± 0.01) × 105 | (16 ± 1) × 10−4 | 500 | (0.03 ± 0.01) × 105 | (15 ± 1) × 10−4 | 375 | (0.04 ± 0.01) × 105 | (15 ± 1) × 10−4 |
| Lys103Asn mutant RT | |||||||||
| RS1202 | 1.3 | (1.9 ± 0.2) × 105 | (2.5 ± 0.5) × 10−4 | 5 | (5 ± 1) × 104 | (2.5 ± 0.5) × 10−4 | 5 | (5 ± 1) × 104 | (2.5 ± 1) × 10−4 |
| RS1588 | 0.3 | (7.1 ± 0.5) × 104 | (2 ± 0.2) × 10−5 | 3 | (4.5 ± 0.5) × 104 | (1.5 ± 0.2) × 10−4 | n.d. | n.d. | n.d. |
| EFV | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | 200 | (0.6 ± 0.01) × 104 | (1.2 ± 0.1) × 10−3 |
| NVP | 3,300 | (0.03 ± 0.005) × 104 | (1 ± 0.2) × 10−3 | 3,300 | (0.03 ± 0.005) × 104 | (1 ± 0.2) × 10−3 | n.d. | n.d. | n.d. |
Enzyme-substrate complexes and kinetic constants are as defined in Fig. 1. Numbers are the mean values of three independent experiments and (standard deviations). n.d., not determined; EFV, efavirenz; NVP, nevirapine; n.a., not applicable (the affinity of EFV for the RTK103N and RTK103N/TP complexes was too low to be measured).