TABLE 1.
Sequence alignment of DNA ligands of CRPMt captured by SELEX and EMSA
| Clone | Aligned sequencea | Genome coordinatesb |
|---|---|---|
| 1D1 | ccgtc TGTGAGCAAGATCACA tagct | 4110823-4110835 (cr) |
| 1B5 | gtatc TGTGACTAAGGTCACA gacgc | 13463-13478 (cr) |
| 2D3 | ctcta TGTGACGAAGCCCACA tcgac | 4329936-4329951 (nc) |
| S16 | tgcaa TGTGATATTAGCCTCA ttttg | 1178962-1178977 (nc) |
| 3G1 | gttgt GGTGACCGCCGTCACA gcgac | 2518157-2518172 (cr) |
a
Sites detected by Gibbs sampling in each clone are shown in capital letters; the underlined sequence for clone 1D1 is from the DNA linker.
b
M. tuberculosis (entry NC_000962.1) genome coordinates of the aligned sites (capital letters). The locations of these regions with respect to annotated protein coding regions or noncoding regions are indicated by “(cr)”and “(nc),”respectively.