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Statistics of repeat sequence annotation.
| Type | nigraHap1 | nigraHap2 | ||||
|---|---|---|---|---|---|---|
| Number | Length (bp) | Percentage | Number | Length (bp) | Percentage (%) | |
| LTR | 68,118 | 57,036,655 | 14.81 | 71,134 | 60,326,817 | 15.45 |
| LINEs | 5,802 | 4,131,930 | 1.07 | 6,112 | 4,312,031 | 1.10 |
| DNA transposons | 19,768 | 13,999,522 | 3.63 | 20,422 | 13,467,978 | 3.45 |
| SINEs | 4,402 | 802,120 | 0.21 | 3,457 | 575,447 | 0.15 |
| Unclassified | 371,412 | 91,171,807 | 23.67 | 302,784 | 94,326,075 | 24.16 |
| Total | 469,502 | 178,528,825 | 46.35 | 403,909 | 184,871,473 | 47.35 |
