Table 6.
Classification of repetitive sequences and ncRNAs of the P. nigra ‘NL-1976’genome.
| Type | nigraHap1 | nigraHap2 | |||||
|---|---|---|---|---|---|---|---|
| Cope number | Average length (bp) | Total length (bp) | Cope number | Average length (bp) | Total length (bp) | ||
| miRNA | 630 | 140.20 | 88,324 | 231 | 125.02 | 28,879 | |
| tRNA | 114 | 74.11 | 8,448 | 487 | 77 | 70,827 | |
| rRNA | total | 10 | 509.2 | 5,092 | 14 | 470.64 | 6,589 |
| LSU rRNA | 5 | 671.6 | 3,358 | 6 | 768.5 | 4,611 | |
| SSU rRNA | 4 | 406 | 1,624 | 7 | 266 | 1,862 | |
| 5S | 1 | 110 | 110 | 1 | 116 | 116 | |
| snRNA | total | 80 | 101.19 | 8,095 | 364 | 104.71 | 38,114 |
| CD-box | 69 | 95.36 | 6,580 | 254 | 91.67 | 23,285 | |
| HACA-box | 3 | 134.33 | 403 | 72 | 124.54 | 9,111 | |
| Splicing | 8 | 139 | 1,112 | 38 | 150.47 | 5,718 | |