Table 4.
HA and NA classification of amplicons generated using Bento lab pro from sample set 1. Subtypes were characterised by manual mapping to a non-redundant reference gene set downloaded from GISAID.
| Sample no. | Sample name | Location | Year | Known subtype | GISAID mapping |
|---|---|---|---|---|---|
| 1 | W1300077_c235 | Kaituna | 2013 | H4N2 | H4N2 |
| 2 | NZ0700106_17 | Turua | 2007 | H5N7 | H5N7 |
| 3 | NZ0700202_15 | Lake Te Rotokare | 2007 | H4N6 | H4N6 |
| 4 | NZ0700202_24 | Lake Te Rotokare | 2007 | H3N8 | H3N8 |
| 5 | NZ0700316_2 | Lake Aniwhenua | 2007 | H12N5 | H12N5 |
| 6 | NZ0700316_53 | Lake Aniwhenua | 2007 | H5N2 | H5N2 |
| 8 | NZ0800177_28 | Kaituna | 2008 | H5N3 | H5N3 |
| 10 | NZ0800177_51 | Kaituna | 2008 | H3N1 | H3N1 |