Table 2. Twenty-three aaRS sequences have a potential mitochondrial and/or chloroplastic targeting sequence.
Amino acid
|
Mitochondrial tRNA
|
predotar
|
targetp
|
mitoprot
|
Experimental localization
|
|||||
---|---|---|---|---|---|---|---|---|---|---|
AGI no. | Mit | Chloro | Mit | Chloro | Mit | Mit | Chloro | Ref. and remarks | ||
Cys | Native | At2g31170 | 0.21 | 0.70 | 0.40 | 0.80 | 0.97 | + | + | 8 |
Met | Native | At3g55400 | 0.35 | 0.93 | 0.19 | 0.83 | 0.91 | + | + | 6 |
Asn | cp-like | At4g17300 | 0.29 | 0.97 | 0.35 | 0.83 | 1.00 | + | + | 8 |
His | cp-like | At3g46100 | 0.50 | 0.01 | 0.59 | 0.22 | 0.99 | + | + | 4 |
Glu | Native | At5g64050 | 0.37 | 0.07 | 0.77 | 0.29 | 1.00 | + | + | — |
Lys | Native | At3g13490 | 0.26 | 0.56 | 0.51 | 0.49 | 0.89 | + | + | — |
Pro | Native | At5g52520 | 0.36 | 0.19 | 0.63 | 0.72 | 0.94 | + | + | — |
Tyr | Native | At3g02660 | 0.13 | 0.84 | 0.19 | 0.86 | 0.98 | + | + | — |
Ser | Native + cp-like | At1g11870 | 0.48 | 0.00 | 0.52 | 0.09 | 0.99 | + | + | — |
Asp | cp-like | At4g33760 | 0.50 | 0.01 | 0.32 | 0.36 | 0.99 | + | + | — |
Ala | Imported | At1g50200 | 0.69 | 0.02 | 0.70 | 0.74 | 0.99 | + | + | AlaRS-1:also cyto (7) |
At5g22800 | 0.04 | 0.00 | 0.19 | 0.63 | 0.87 | + | + | AlaRS-2 | ||
Phe | Imported | At3g58140 | 0.39 | 0.48 | 0.16 | 0.76 | 0.94 | + | + | — |
Leu | Imported | At4g04350 | 0.01 | 0.03 | 0.25 | 0.92 | 0.83 | − | + | LeuRS-2 |
Arg | Imported | At4g26300 | 0.04 | 0.61 | 0.10 | 0.91 | 0.74 | − | + | — |
Thr | Imported | At5g26830 | 0.91 | 0.00 | 0.72 | 0.31 | 1,00 | + | − | ThrRS-1:also cyto (9) |
At2g04842 | 0.18 | 0.96 | 0.14 | 0.89 | 1.00 | + | + | ThrRS-2 | ||
Val | Imported | At1g14610 | 0.88 | 0.04 | 0.84 | 0.24 | 0.99 | + | − | ValRS-1:also cyto (9) |
At5g16715 | 0.79 | 0.60 | 0.11 | 0.94 | 1.00 | ? | + | ValRS-2 | ||
Trp | Imported | At2g25840 | 0.18 | 0.39 | 0.27 | 0.85 | 0.96 | + | + | — |
Gly | Imported + native | At1g29880 | 0.41 | 0.01 | 0.91 | 0.04 | 0.92 | + | − | GlyRS-1:also cyto (5) |
At3g48110 | 0.09 | 0.15 | 0.22 | 0.82 | 0.99 | + | + | GlyRS-2 (5) | ||
Ile | Imported + native | At5g49030 | 0.07 | 0.52 | 0.13 | 0.77 | 0.55 | ? | + |
The origin of their cognate mitochondrial tRNAs is indicated. The targeting predictions obtained with different programs are indicated, as well as the experimental results. Mit, mitochondrial; Chloro, chloroplastic.