Table 1.
Percent of potentially problematic GeneChip probe sets
| Chiptype | Unreliable representative public ID | UniGene redundancy | Containing probe(s) with multiple UniGene hit | Having probe(s) with multiple genome hit | With genomic location or strand issues | Including probe(s) with no known target | Containing allele-specific probe(s) |
|---|---|---|---|---|---|---|---|
| HG-U95Av2 | 27.9 | 21.1 | 36.6 | 16.2 | 8.8 | 4.6 | 40.5 |
| HG-U133A | 14.4 | 34.2 | 36.0 | 16.3 | 10.1 | 3.6 | 42.7 |
| HG-U133B | 22.2 | 31.4 | 22.3 | 9.3 | 10.4 | 5.0 | 35.2 |
| HG-U133 Plus | 18.2 | 47.2 | 26.1 | 11.6 | 12.0 | 4.8 | 37.6 |
| Human X3P | 21.0 | 50.8 | 22.8 | 10.6 | 10.3 | 4.8 | 32.7 |
| MG-U74Av2 | 42.7 | 18.8 | 28.8 | 16.1 | 8.8 | 10.0 | 11.7 |
| MOE430A | 13.3 | 38.6 | 30.9 | 15.0 | 10.4 | 4.1 | 11.0 |
| MOE430B | 28.5 | 31.2 | 16.5 | 5.5 | 9.9 | 11.6 | 4.6 |
| Mouse430 | 20.8 | 44.7 | 23.6 | 10.2 | 11.2 | 7.8 | 7.8 |
| Rn34A | 21.3 | 28.0 | 17.4 | 15.8 | 7.0 | 8.2 | 18.1 |
| RAE230A | 10.7 | 17.5 | 16.5 | 13.2 | 8.7 | 3.6 | 19.5 |
| RAE230B | 32.8 | 15.1 | 6.8 | 7.0 | 5.0 | 15.8 | 7.8 |
| Rat230 | 21.5 | 24.8 | 11.7 | 10.1 | 8.3 | 9.6 | 13.7 |