AA	Amino acid
ABC	ATP-binding cassette
AIP	Auto-inducing peptides
AMR	Antimicrobial resistance
ARO	Antibiotic-resistant organism
bp	Base pair
CARD	Comprehensive Antibiotic Resistance Database
Cas	CRISPR-associated genes
CDS	Coding sequence
CLSI	Clinical and Laboratory Standards Institute
CRISPR	Clustered regularly interspaced short palindromic repeats
GRAS	Generally recognized as safe
IS	Insertion sequence
MFS	Major facilitator superfamily
MHA	Mueller–Hinton agar
MHB	Mueller–Hinton broth
MIC	Minimum inhibitory concentration
MPH	Macrolide phosphotransferase
PGAP	Prokaryotic Genome Annotation Pipeline
PHASTER	Phage Search Tool Enhanced Release
RAST	Rapid annotations using subsystems technology
RiPPs	Ribosomally synthesized and post-translationally modified peptides
SMR	Small multidrug resistance
VF	Virulence factor
VFDB	Virulence Factor Database
WGS	Whole-genome sequencing