Table 2. Genome sequencing assembly results and quality.
The table shows each strain, the proposed species characterization, genome size in Mb, the G+C content (mol%), completeness (%) and contamination (%) as determined by CheckM, number of predicted genes, coding density as a proportion, the average fold coverage of the genome, number of contigs, N50 of assembly scaffolds in Mb, number of tRNAs, number of copies of rRNA, the Whole Genome Shotgun (WGS) accession and BioSample of the genomes on NCBI and, for each type strain, the collection ID for USDA ARS and DSMZ culture collections.
| Proposed species | S. anthophorae sp. nov. | S. nidicola sp. nov. | ||||
|---|---|---|---|---|---|---|
| Strain | BH034T | BH055 | BH097 | BH104 | BH105 | BH106T |
| Genome size (Mb) | 9.62 | 9.66 | 9.67 | 8.76 | 9.67 | 9.46 |
| G+C content (mol%) | 71 | 70.9 | 71 | 70.9 | 70.9 | 70.7 |
| Completeness (%) | 99.89 | 99.46 | 99.46 | 99.89 | 99.46 | 98.61 |
| Contamination (%) | 1.29 | 1.29 | 0.43 | 1.29 | 1.29 | 0.43 |
| Predicted genes | 8,716 | 8,797 | 8,774 | 8,026 | 8,891 | 8,426 |
| Coding density | 0.894 | 0.892 | 0.893 | 0.893 | 0.894 | 0.895 |
| Fold coverage avg. | 80 | 196 | 29 | 214 | 419 | 400 |
| Contigs | 3 | 3 | 6 | 6 | 4 | 2 |
| N50 scaffolds (Mb) | 9.38 | 9.42 | 9.4 | 6.14 | 9.56 | 9.43 |
| tRNAs | 65 | 65 | 67 | 68 | 65 | 65 |
| rRNA copies | 7 | 7 | 7 | 7 | 7 | 7 |
| WGS accession | JBLWQQ000000000 | JBLWIQ010000000 | JBNBPK000000000 | JBMHXW000000000 | JBNBPJ000000000 | JBNBPI000000000 |
| BioSample genome | SAMN47132431 | SAMN46926878 | SAMN47438835 | SAMN47438836 | SAMN47438837 | SAMN47438838 |
| 16S rRNA accession | PP576370 | PP576373 | PP576371 | PP576372 | PV476755 | PV476756 |
| Collection ID USDA ARS | NRRL B-65741 | NRRL B-65742 | ||||
| Collection ID DSMZ | DSM 119658 | DSM 119659 | ||||