Table 2. Genome assembly data for Rhagonycha lutea, icRhaLute1.1.
| Genome assembly | ||
|---|---|---|
| Assembly name | icRhaLute1.1 | |
| Assembly accession | GCA_958510855.1 | |
| Accession of alternate haplotype | GCA_958510815.1 | |
| Span (Mb) | 479.80 | |
| Number of contigs | 197 | |
| Number of scaffolds | 108 | |
| Longest scaffold (Mb) | 106.35 | |
| Assembly metrics * | Benchmark | |
| Contig N50 length (Mb) | 7.5 | ≥ 1 Mb |
| Scaffold N50 length (Mb) | 71.0 | = chromosome N50 |
| Consensus quality (QV) | 67.0 | ≥ 40 |
| k-mer completeness | primary: 91.69%; alternate:
78.41%; combined: 98.86% |
≥ 95% |
| BUSCO ** | C:98.7%[S:94.9%,D:3.8%],
F:0.6%,M:0.7%,n:2,124 |
S > 90%, D < 5% |
| Percentage of assembly
mapped to chromosomes |
90.1% | ≥ 90% |
| Sex chromosomes | XO | localised homologous pairs |
| Organelles | Mitochondrial genome: 20.08 kb | complete single alleles |
| Genome annotation of assembly GCA_958510855.1 at Ensembl | ||
| Number of protein-coding
genes |
24,745 | |
| Number of gene transcripts | 25,147 | |
* Assembly metric benchmarks are adapted from Rhie et al. (2021) and the Earth BioGenome Project Report on Assembly Standards September 2024.
** BUSCO scores based on the endopterygota_odb10 BUSCO set using version 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/icRhaLute1_1/dataset/icRhaLute1_1/busco.