Table 2:
Table of the total number of positive-associated clones across multiple participants. RB, RP1, and RP2 are the number of clones (richness) detected for each individual in the sample B, P1, and P2, respectively. In the B versus P1, B versus P2, and P1 versus P2 columns, we list the number of SARS-CoV-2 clones identified through their sufficient increases in abundance as determined by our CEI-Joint and CEI-ACAT approaches. We set the FDR α = 10% for selection.
| Individuals | R B | R P1 | R P2 | B vs P1 | B vs P2 | P1 vs P2 | |||
|---|---|---|---|---|---|---|---|---|---|
| Joint | ACAT | Joint | ACAT | Joint | ACAT | ||||
| CLE0083 | 184, 988 | 315, 615 | 322, 569 | 359 | 5 | 373 | 3 | 2 | 2 |
| CLE0099 | 223, 828 | 85, 703 | 231, 395 | 451 | 216 | 44 | 27 | 2584 | 12 |
| CLE0100 | 245, 481 | 219, 434 | 267, 635 | 1 | 1 | 4 | 21 | 17 | 16 |
| CLE0101 | 252, 373 | 271, 931 | 177, 847 | 24 | 89 | 101 | 47 | 202 | 33 |
| CLE0108 | 136, 808 | 591, 274 | 208, 447 | 5127 | 5 | 46 | 2 | 2001 | 60 |
| CLE0117 | 133, 666 | 89, 962 | 369, 441 | 117 | 5 | 4248 | 3 | 5119 | 11 |
| CLE0136 | 370, 013 | 386, 065 | 297, 501 | 2 | 4 | 5 | 6 | 17 | 7 |