TABLE 2.
Affiliations of sequenced tet genes, as determined by comparison to GenBank sequences
| tet class | tet clone; prevalence (accession no.) | Most similar match (accession no.) | Identity (%) |
|---|---|---|---|
| tet(A) | BC-AC-1; 8/10 (AY171576) | Gram-negative bacteria, Tn1721 (X61367) | 100 |
| BC-AC-2; 1/10 (AY171577) | Gram-negative bacteria, Tn1721 (X61367) | 98.2 | |
| tet(C) | BC-AC-3; 1/10 (AY171578) | Aeromonas salmonicida, pRAS3.2 (AY043299) | 99.8 |
| tet(G) | BC-G-1; 3/14 (AY171579) | Salmonella enterica serovar Typhimurium (AF261825) | 94.2 |
| BC-G-2; 1/14 (AY171580) | Salmonella enterica serovar Typhimurium (AF261825) | 94.4 | |
| BC-G-3; 2/14 (AY171581) | Mannheimia haemolytica (AJ276217) | 96.0 | |
| BC-G-4; 3/14 (AY171582) | Pseudomonas sp./pPSTG1 (AF133139) | 100 | |
| BC-G-5; 2/14 (AY171583) | Pseudomonas sp./pPSTG1 (AF133139) | 98.3 | |
| BC-G-6; 3/14 (AY171584) | Pseudomonas sp./pPSTG1 (AF133139) | 95.6 | |
| tet(O) | BC-RPP-1; 2/31 (AY171585) | Campylobacter jejuni (M18896) | 99.4 |
| BC-RPP-2; 3/31 (AY171586) | Streptococcus mutans (M20925) | 99.0 | |
| BC-RPP-3; 2/31 (AY171587) | Campylobacter jejuni (M18896) | 94.8 | |
| tet(M) | BC-RPP-4; 1/31 (AY171588) | Clostridium septicum (AB054984) | 98.9 |
| tet(Q) | BC-RPP-5; 3/31 (AY171589) | Bacteroides fragilis tet(Q)3 (Y08615) | 96.5 |
| BC-RPP-6; 11/31 (AY171590) | Bacteroides fragilis tet(Q)3 (Y08615) | 100 | |
| BC-RPP-7; 1/31 (AY171591) | Bacteroides fragilis tet(Q)3 (Y08615) | 96.7 | |
| BC-RPP-8; 1/31 (AY171592) | Bacteroides fragilis tet(Q)3 (Y08615) | 96.0 | |
| BC-RPP-9; 2/31 (AY171593) | Bacteroides fragilis tet(Q)3 (Y08615) | 97.8 | |
| tet(W) | BC-RPP-10; 1/31 (AY171594) | Butyrivibrio fibrisolvens (AJ427421) | 99.9 |
| BC-RPP-11; 2/31 (AY171595) | Bifidobacterium sp. strain ISO3519 (AF202986) | 96.8 | |
| BC-RPP-12; 2/31 (AY171596) | Arcanobacterium pyogenes (AY049983) | 94.9 |