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. 2005 Nov;71(11):7301–7309. doi: 10.1128/AEM.71.11.7301-7309.2005

TABLE 1.

Identification of the main bands of the SSCP gels by excision, sequencing, and comparison with 16S and RNA gene sequences from public databases

Band no. Accession no. Cultured closest matcha Size (bp) Identity (%)
1 AJ884727 Bradyrhizobium sp. 371 99
2 AJ884728 Herbaspirillum sp. 371 97
3 AJ884729 Desulfovibrio sp. 371 82
4 AJ884730 Oscillatoria sp. 355 83
5 AJ884731 Bradyrhizobium sp. 371 100
6 AJ884732 Bdellovibrio sp.* 158 80
7 AJ884733 Herbaspirillum sp. 371 98
8 AJ884734 Acidovorax sp. or Variovorax sp. 257 98
9 AJ884735 Pelotomaculum sp. 370 85
10 AJ884736 Sphingomonas sp. or Paracoccus sp. 370 81
11 AJ884737 Rhodovibrio sp. 370 87
12 AJ884738 Trichlorobacter sp. 304 84
13 AJ884739 Pectinatus sp. 371 82
14 AJ884740 Bradyrhizobium sp. 371 98
15 AJ884741 Bdellovibrio sp.* 170 89
16 AJ884742 Acidithiobacillus sp.* 171 91
17 AJ884743 Beggiatoa sp.* 206 86
18 AJ884744 Polynucleobacter sp.* 165 87
19 AJ884745 Herbaspirillum sp. 371 98
20 AJ884746 Acanthamoeba sp. mitochondrion 371 99
a

*, sequence obtained for only one primer.