TABLE 1.
Phylotypea | 16 rRNA sequence length (bp) | Species | % Identity |
---|---|---|---|
Actino1α | 643 | Actinomyces canis | 96.7 |
Actino2α | 697 | Actinomyces canis | 99.4 |
Actino3α | 697 | Actinomyces bowdenii | 99.7 |
Actino5 | 396 | Actinomyces hordeovulneris | 98.4 |
Actino8α | 684 | Actinomyces hordeovulneris | 96.1 |
Actino7 | 440 | Actinomyces hordeovulneris | 99.0 |
Actino9α | 605 | Actinomyces coleocanis | 96.6 |
arth3α• | 814 | Micrococcus luteus | 98.7 |
berg1 | 868 | Bergeyella zoohelcum | 94.8 |
berg2α | 611 | Bergeyella zoohelcum | 95.5 |
bpp11 | 334 | Porphyromonas macacae | 95.4 |
bpp3• | 399 | Prevotella heparinolytica | 96.9 |
bpp6 | 1,083 | Porphyromonas gulae | 99.9 |
bpp7 | 538 | Porphyromonas canoris | 96.7 |
bpp8α | 655 | Porphyromonas cangingivalis | 99.1 |
bpp9α | 611 | Porphyromonas cansulci | 98.5 |
Camp2• | 374 | Campylobacter curvus | 96.7 |
Capno1α | 362 | Capnocytophaga cynodegmi | 97.4 |
clos2 | 304 | Clostridium perfringens | 100.0 |
cory5α | 885 | Corynebacterium appendicis | 98.0 |
dia1α• | 758 | Dialister invisus | 99.8 |
fuso1α• | 808 | Filifactor alocis | 99.0 |
fuso4 | 384 | Filifactor villosus | 98.1 |
gem1 | 908 | Gemella palaticanis | 97.9 |
Haem2 | 274 | Haemophilus haemoglobinophilus | 96.6 |
lam1 | 336 | Lampropedia hyalina | 97.0 |
nei3α | 663 | Neisseria canis | 99.5 |
nei4 | 1,089 | Neisseria canis | 98.6 |
nei5 | 346 | Neisseria weaveri | 100.0 |
past1α | 718 | Pasteurella dagmatis | 98.5 |
past2α | 822 | Pasteurella dagmatis | 98.3 |
pep1• | 333 | Peptostreptococcus anaerobius | 98.7 |
pep2α• | 703 | Micromonas micros | 96.0 |
prop3α• | 696 | Propionibacterium acnes | 99.8 |
rhod1• | 417 | Dietzia psychralcaliphila | 98.7 |
staph1α• | 638 | Staphylococcus epidermidis | 99.6 |
strep2α | 634 | Streptococcus minor | 98.3 |
strep3• | 403 | Streptococcus bovis | 99.2 |
wol1α• | 857 | Wolinella succinogenes | 98.5 |
past3α | 839 | Bisgaard taxon 16 | 97.7 |
α, a high-fidelity sequence was used for this phylotype identification; •, an indigenous member of the human oral microbiota.