TABLE 3.
Level of identification and phylotype | Species | % Identity | Closest human species | % Identity |
---|---|---|---|---|
Species level | ||||
actino3 | A. bowdenii | 99.7 | A. naeslundii+a | 96.4 |
actino1 | A. canis | 96.7 | Actinomyces sp.+ | 91.7 |
actino2 | A. canis | 99.4 | Actinomyces sp.+ | 92.9 |
actino9 | A. coleocanis | 96.6 | A. europaeus | 90.4 |
actino8 | A. hordeovulneris | 96.1 | A. nasicola | 93.3 |
berg2 | B. zoohelcum | 95.5 | Flavobacteriaceae genomosp. C1 | 90.2 |
capno1 | C. cynodegmi | 97.4 | Capnocytophaga sp. | 94.3 |
dia1 | D. invisus | 99.8 | D. invisus+ | 99.8 |
arth3 | M. luteus | 98.7 | M. luteus+ | 98.7 |
nei3 | N. canis | 99.5 | Neisseria sp.+ | 93.1 |
prop3 | P. acnes | 99.8 | P. acnes+ | 99.8 |
bpp8 | P. cangingivalis | 99.1 | P. levii | 88.5 |
bpp9 | P. cansulci | 98.5 | Tannerella forsythensis+ | 85.5 |
past1 | P. dagmatis | 98.5 | Haemophilus cf. paragallinarum | 89.9 |
strep2 | S. minor | 98.3 | Streptococcus sp.+ | 89.5 |
wol1 | W. succinogenes | 98.5 | W. succinogenes+ | 98.5 |
Mean | 98.3 | 93.3 | ||
Less reliable than species level | ||||
actino6 | A. hordeovulneris | 94.9 | A. nasicola | 94.2 |
bpp4 | B. uniformis | 91.5 | Bacteroides sp. | 98.2 |
bpp5 | Bacteroides sp. | 92.4 | Dysgonomonas mossii | 89.9 |
cory1 | C. bovis | 79.6 | C. accolens | 79.9 |
cory4 | C. macginleyi | 94.1 | C. macginleyi | 94.1 |
card1 | C. valvarum | 93.0 | C. valvarum | 93.0 |
prop2 | Friedmanniella spumicola | 91.7 | Luteococcus sanguinis | 91.8 |
abio1 | G. balaenopterae | 91.2 | G. elegans | 81.9 |
pep3 | Helcococcus sp. | 89.5 | H. sueciensis | 89.5 |
morax2 | M. cuniculi | 95.1 | M. cuniculi | 95.1 |
morax1 | M. osloensis | 89.4 | M. osloensis | 89.4 |
nei1 | N. dentiae | 96.0 | N. meningitides | 93.1 |
nei7 | N. elongata | 94.4 | N. elongata+ | 94.4 |
strep4 | S. bovis | 91.8 | S. mitis+ | 90.8 |
bul1 | Solobacterium sp. | 84.6 | Solobacterium sp.+ | 84.6 |
xen1 | X. azovorans | 94.8 | Lautropia sp.+ | 92.2 |
Mean | 91.5 | 90.8 |
+, bacteria of oral origin.