TABLE 2.
Clusters of isolates based on identical MIRU and spoligotyping alleles
| Family designationa | Cluster no. | VIT no. | SIT no. | No. of isolates | % of clustered isolates |
|---|---|---|---|---|---|
| Central Europe 1 | 1 | 220 | 39 | 3 | 2 |
| LAM3 | 2 | 236 | 33 | 6 | 4 |
| LAM3 | 3 | 213 | 33 | 32 | 22 |
| LAM4 | 4 | 249 | 130 | 2 | 1 |
| LAM3 | 5 | 213 | 719 | 13 | 9 |
| LAM3 | 6 | 213 | 1294 | 2 | 1 |
| LAM3 | 7 | 213 | 2014 | 2 | 1 |
| Russia 1 | 8 | 140 | 254 | 3 | 2 |
| S | 9 | 212 | 34 | 3 | 2 |
| S | 10 | 250 | 71 | 2 | 1 |
| S | 11 | 252 | 71 | 2 | 1 |
| S | 12 | 262 | 71 | 2 | 1 |
| T3 | 13 | 257 | 73 | 2 | 1 |
| Tuscanyb | 14 | 140 | 1737 | 2 | 1 |
| W-Beijing | 15 | 104 | 1 | 24 | 16 |
| W-Beijing | 16 | 223 | 1 | 5 | 3 |
| W-Beijing | 17 | 254 | 1 | 2 | 1 |
| W-Beijing | 18 | 83 | 1 | 3 | 2 |
| W-Beijing | 19 | 238 | 1 | 5 | 3 |
| W-Beijing | 20 | 17 | 1 | 9 | 6 |
| W-Beijing | 21 | 99 | 1 | 7 | 5 |
| W-Beijing | 22 | 245 | 1 | 2 | 1 |
| X1 | 23 | 112 | 119 | 5 | 3 |
| X1 | 24 | 117 | 119 | 2 | 1 |
| X1 | 25 | 258 | 2019 | 2 | 1 |
| X3 | 26 | 34 | 92 | 4 | 3 |
| Z | 27 | 237 | 811 | 2 | 1 |
a
Family and VIT-SIT designations are from SpolDB4 (Brudley et al, unpublished).
b
Data are from reference 8.