Table 1.
Second-Generation Telomere Clones and Their Location
| Telomere | Clone ID | CloneType | MaximumPhysicalDistancefromTelomere(kb) | Method | Fiber-FISH (kb)a | RHMapping(cR)b | Marker |
| 1p | GS-62-L8 | PAC | 200 | Interphase mapping from subtelomeric sequences | 7.69 tel | 1PTEL06 | |
| GS-232-B23 | BAC | 200 | Interphase mapping from subtelomeric sequences | CEB108/T7 | |||
| 1q | GS-160-H23 | PAC | 80 | Contig | <50 | 1QTEL19 | |
| GS-167-K11 | BAC | 270 | RARE from YAC end sequence | 1QTEL10, 1QTEL19, VIJ-YRM2123 | |||
| 2p | GS-892-G20 | PAC | 330 | RARE from YAC end sequence | 2PTEL27 | ||
| GS-8-L3 | BAC | 330 | RARE from YAC end sequence | VIJ-YRM2052 | |||
| 2q | GS-1011-O17 | PAC | 240 | RARE from YAC end sequence | 2QTEL47 | ||
| RG-172-I13 | BAC | 240 | RARE from YAC end sequence | VIJ-YRM2112 | |||
| 3p | GS-1186-B18 | PAC | 450 | RARE from YAC end sequence | 150–250 | 3PTEL25 | |
| RG-228-K22 | BAC | 450 | RARE from YAC end sequence | 3PTEL25 | |||
| 3q | 196-F4 | PAC | 450 | YAC clone size | 3QTEL06 | ||
| GS-56-H22 | BAC | 450 | YAC clone size | 3QTEL05 | |||
| 4p | GS-36-P21 | PAC | 73 | Sequence: Z95704 | 80–100 | 4PTEL04 | |
| GS-118-B13 | BAC | 101 | Sequence: Z95704; walk from 4PTEL01 | GS10K2/T7 | |||
| 4q | GS-963-K6 | PAC | 275–500 | Contig (vanGeel et al. 1999) | 2.9 tel | 4QTEL11 | |
| GS-31-J3 | BAC | 300–700c | Interphase distance from 4QTEL11 | AFMA224XH1 | |||
| 5p | GS-189-N21 | PAC | Unknown | 16.2 cen | 5PTEL48 | ||
| GS-24-H17 | PAC | Unknown | Distal marker of 5p contig | C84C11/T3 | |||
| 5q | GS-240-G13 | PAC | 245 | YAC clone size | 5QTEL70 | ||
| 6p | GS-62-I11 | PAC | 300 | Fiber FISH | <300 | 19.3 cen | 6PTEL48 |
| GS-196-I5 | BAC | 300 | 6PTEL48 | ||||
| 6q | GS-57-H24 | PAC | 280 | RARE from YAC end sequence | 6QTEL54 | ||
| 7p | GS-164-D18 | PAC | 255 | YAC clone size | ∼130 | 5.76 cen | 7PTEL03, VIJ-YRM2185 |
| 7q | GS-3K-23 | PAC | 7 | Sequence: AF027390 | 7QTEL20, VIJ-YRM2000 | ||
| 8p | GS-580-L5d | PAC | 250 | YAC clone size | NP | 8PTEL91 | |
| GS-77-L23 | BAC | 250–450c | Interphase distance from 8PTEL91 | AFM197XG5 | |||
| 8q | GS-489-D14 | PAC | 170 | RARE from YAC end sequence | 8QTEL11 | ||
| GS-261-I1 | BAC | 170 | RARE from YAC end sequence | VIJ-YRM2053 | |||
| 9p | GS-43-N6 | PAC | 600 | YAC clone size | <600 | 13.9 tel | 9PTEL30 |
| RG-41-L13 | BAC | 190 | YAC clone size | 305J7-T7 | |||
| 9q | GS-112-N13d | PAC | 65 | YAC clone size | NP | 9QTEL33 | |
| GS-135-I17 | BAC | 65 | YAC clone size | VIJ-YRM2241 | |||
| 10p | GS-306-F7 | PAC | 320 | YAC clone size | ∼100 | 10PTEL45 | |
| GS-23-B11 | BAC | 320 | YAC clone size | 10PTEL006 | |||
| 10q | GS-137-E24 | PAC | 270 | YAC clone size | ∼100 | 10QTEL24 | |
| GS-261-B16 | BAC | 270 | YAC clone size | 10QTEL24 | |||
| 11p | GS-908-H22d | PAC | 125 | YAC clone size | NP | 11PTEL03 | |
| GS-44-H16 | PAC | 125 | YAC clone size | VIJ-YRM2209 | |||
| 11q | GS-770-G7d | PAC | 65 | YAC clone size | NP | 11QTEL38 | |
| GS-26-N8 | PAC | 65 | YAC clone size | VIJ-YRM2072 | |||
| 12p | GS-496-A11d | PAC | Unknown | TTAGGG clone | NP | 27.8 cen | 12PTEL27 |
| GS-8-M16d | BAC | 100 | YAC clone size | TYAC-14 | |||
| GS-124-K20 | BAC | 100 | YAC clone size | 8M16/SP6 | |||
| 12q | GS-221-K18 | PAC | 190 | RARE from YAC end sequence | 100/600e | 12QTEL87, VIJ-YRM2196 | |
| 13q | GS-163-C9 | PAC | 170 | RARE from YAC end sequence | <20 | 13QTEL56 | |
| GS-1-L16 | PAC | 170 | RARE from YAC end sequence | VIJ-YRM2002 | |||
| 14q | GS-820-M16 | PAC | 200 | RARE from YAC end sequence | 14QTEL01 | ||
| GS-200-D12 | BAC | 200 | RARE from YAC end sequence | VIJ-YRM2006 | |||
| 15q | GS-124-05d | PAC | 300c | Interphase mapping from 15q YAC | NP | 24.46 tel | 15QTEL56 |
| GS-154-P1 | PAC | 300c | Interphase mapping from 15q YAC | WI-5214 | |||
| 16p | GS-121-I4 | PAC | 160 | Sequence: Z84721 | 16PTEL05 | ||
| RG-191-K2 | BAC | 160 | Sequence: Z84721 | 16PTEL05 | |||
| 16q | GS-240-G10 | PAC | 200 | YAC clone size | 17.91 tel | 16QTEL48 | |
| GS-191-P24 | PAC | 200 | YAC clone size | 16QTEL13 | |||
| 17p | GS-202-L17d | PAC | 60 | Contig (Xiang et al. 1999) | 30/100e | 17PTEL80 | |
| GS-68-F18 | BAC | 100–200 | Walk from 17PTEL80 | 282M15/SP6 | |||
| 17q | GS-362-K4d | PAC | 90 | YAC clone size | NP | 17QTEL13 | |
| GS-50-C4 | BAC | 100–300 | Interphase distance from 17QTEL13 | AFM217YD10 | |||
| 18p | GS-52-M11 | P1 | 220 | RARE from YAC end sequence | 18PTEL02 | ||
| GS-74-G18 | BAC | 220 | RARE from YAC end sequence | VIJ-YRM2102 | |||
| 18q | GS-964-M9 | PAC | 290 | RARE from YAC end sequence | 18QTEL11 | ||
| GS-75-F20 | BAC | 290 | RARE from YAC end sequence | VIJ-YRM2050 | |||
| 19p | GS-546-C11 | PAC | 250–500 | LLNL chromosome 19 contig | NP | 16.13 tel | 19PTEL29 |
| RG-129-F16 | BAC | 250–500 | LLNL chromosome 19 contig | 129F16/SP6 | |||
| 19q | GS-48-O23 | PAC | 250–500 | LLNL chromosome 19 contig | 11.65 tel | 19QTEL12 | |
| GS-325-I23 | BAC | 250–500 | LLNL chromosome 19 contig | D19S238E | |||
| 20p | GS-1061-L1 | PAC | 180 | YAC clone size | 20PTHY33 | ||
| GS-82-O2 | PAC | 180 | YAC clone size | 20PTEL18 | |||
| 20q | GS-81-F12d | PAC | 50 | Fiber FISH | <50 | 28.2 tel | 20QTEL14 |
| 21q | GS-63-H24 | PAC | 175 | RARE from YAC end sequence | 21QTEL07 | ||
| GS-2-H14d | P1 | 175 | RARE from YAC end sequence | VIJ-YRM2029 | |||
| 22q | GS-99-K24d | PAC | 120 | Sequence: (Dunham et al. 1999) | 150–200 | 12.6 tel | 22QTEL31 |
| CITD-3018-K1 | BAC | 155 | Sequence: (Dunham et al. 1999) | 3018K1/T7 | |||
| XpYp | GS-98-C4 | PAC | 490 | STS map (Nagaraja et al. 1997) | DXYS28 | ||
| RPCI-11-839-D20 | BAC | 160 | STS map (Nagaraja et al. 1997) | DXYS129 | |||
| XqYq | GS-225-F6 | BAC | 100 | CDY16C07 | |||
| Xq | GS-202-M24 | PAC | 500 | STS map (Nagaraja et al. 1997) | DXS7059 |
a
NP = not possible, because of cross-hybridization.
b
cen = centromeric; tel = telomeric.
c
The distance given is the sum of the size of the relevant half-YAC and the estimated interphase FISH distance between the BAC clone and a subtelomeric clone known to be contained within the half-YAC.
d
Cross-hybridization visible by FISH; see table 3 for details.
e
Fiber-FISH indicates a size polymorphism.