Table B1.

Percent Sequence Divergence Within and Between African Haplogroups

	Sequence Divergencea(%)
	L	L1	L2	L3	L1a	L1b	L2a	L2b	L2c	L3a	L3b	L3c	L3d	L1a1	L1a2	L1b1	L1b2
L	.356	.360	.331	.362	.357	.355	.343	.353	.351	.355	.373	.357	.356	.348	.365	.343	.370
L1	.018	.328	.357	.362	.315	.322	.352	.343	.364	.341	.369	.339	.334	.309	.322	.305	.347
L2	.068	.108	.171	.264	.335	.288	.165	.172	.163	.214	.251	.199	.185	.277	.310	.231	.274
L3	.071	.084	.065	.227	.350	.306	.262	.249	.270	.213	.243	.221	.220	.309	.336	.254	.320
L1a	.047	.019	.118	.104	.265	.323	.328	.305	.341	.315	.347	.300	.286	.252	.252	.281	.337
L1b	.070	.051	.096	.086	.083	.214	.289	.272	.303	.260	.333	.259	.243	.279	.313	.165	.249
L2a	.108	.132	.023	.092	.139	.125	.113	.141	.162	.204	.266	.180	.155	.271	.311	.214	.301
L2b	.140	.144	.051	.100	.137	.129	.099	.072	.120	.196	.286	.193	.160	.243	.267	.175	.343
L2c	.147	.174	.051	.130	.182	.170	.100	.101	.052	.206	.274	.176	.128	.283	.325	.221	.320
L3a	.117	.117	.069	.039	.122	.093	.197	.147	.138	.120	.134	.119	.071	.259	.294	.163	.321
L3b	.082	.092	.053	.017	.102	.114	.155	.132	.101	.239	.225	.248	.052	.318	.333	.271	.401
L3c	.138	.134	.073	.067	.127	.111	.148	.183	.146	.158	.104	.082	.098	.239	.253	.161	.320
L3d	.152	.144	.074	.081	.128	.111	.093	.140	.127	.140	.226	.128	.051	.215	.208	.125	.309
L1a1	.088	.063	.108	.113	.037	.090	.218	.149	.169	.214	.259	.155	.101	.166	.267	.215	.298
L1a2	.127	.099	.165	.163	.060	.146	.305	.220	.258	.293	.228	.216	.141	.221	.119	.239	.329
L1b1	.144	.120	.126	.120	.128	.038	.141	.144	.210	.084	.087	.120	.114	.090	.161	.041	.217
L1b2	.069	.060	.065	.084	.081	.019	.168	.169	.125	.195	.380	.156	.114	.218	.202	.012	.246

^aIntrahaplogroup sequence-divergence values are shown on the diagonal (underlined), whereas the raw and corrected interhaplogroup values are shown above and below the diagonal, respectively.