Table 6.
Kung and Khwe CR Sequences
|
No. in |
Positions in |
||||
| CR | Haplotype(s) (Haplogroup) | Kung | Khwe | HVS-1 | HVS-2 |
| 1 | AF87, AF90 (L1a) | 8 | … | 16167T, 16187T, 16189C, 16223T, 16230G, 16234T, 16242T, 16243C, 16311C | 73G, 146C, 152C, 195C, 198T, 247A, 315C+ |
| 2 | AF88–AF89 (L1a) | 8 | … | 16167T, 16187T, 16189C, 16223T, 16230G, 16234T, 16242T, 16243C, 16311C | 73G, 146C, 152C, 195C, 198T, 247A, 309C+, 315C+ |
| 3 | AF93 (L1a) | 1 | … | 16153A, 16187T, 16189C, 16223T, 16230G, 16243C, 16294T, 16311C | 73G, 146C, 152C, 195C, 247A, 315C+ |
| 4 | AF94 (L1a) | 1 | … | 16129A, 16187T, 16189C, 16230G, 16234T, 16243C, 16266A, 16311C | 73G, 146C, 152C, 199C, 247A, 315C+ |
| 5 | AF93 (L1a) | 1 | … | 16129A, 16187T, 16189C, 16230G, 16234T, 16243C, 16264T, 16266G, 16311C | 73G, 146C, 152C, 195C, 199C, 247A, 315C+ |
| 6 | AF95 (L1a) | 1 | … | 16093C, 16129A, 16187T, 16189C, 16230G, 16234T, 16243C, 16266G, 16311C | 73G, 146C, 152C, 195C, 199C, 247A, 315C+ |
| 7 | AF91 (L1a) | 2 | … | 16129A, 16179T, 16187T, 16189C, 16223T, 16230G, 16243C, 16311C | 73G, 146C, 152C, 188G, 195C, 247A, 315C+ |
| 8 | AF92 (L1a) | 5 | 16129A, 16179T, 16187T, 16189C, 16223T, 16230G, 16243C, 16311C | 73G, 146C, 152C, 188G, 195C, 247A, 309C+, 315C+ | |
| 9 | AF104 (L1b) | … | 1 | 16126C, 16187T, 16189C, 16223T, 16264T, 16270T, 16278T, 16311C | 73G, 151T, 195C, 247A, 263A, 315C+ |
| 10 | AF85–AF86 (L3b) | 5 | … | 16124C, 16183C, 16189C, 16193C+, 16223T, 16278T, 16304C, 16311C | 73G, 152C, 195C, 263G, 309C+, 315C+ |
| 11 | AF85 (L3b) | … | 1 | 16124C, 16183C, 16189C, 16193C+, 16223T, 16278T, 16304C, 16311C | 73G, 152C, 263G, 315C+ |
| 12 | AF105 (L2) | … | 3 | 16189C, 16192T, 16223C, 16278T, 16294T, 16309G, 16390A | 73G, 146C, 152C, 195C, 263G, 309C+, 315C+ |
| 13 | AF46 (L2b) | … | 2 | 16114A, 16129A, 16213A, 16223T, 16278T, 16284G, 16355T, 16362C, 16390A | 73G, 150T, 151T, 152C, 182T, 195C, 198T, 204C, 263G |
| 14 | AF106–107 (L2b) | 2 | … | 16114A, 16129A, 16213A, 16223T, 16278T, 16354T, 16390A | 73G, 150T, 151T, 152C, 182T, 195C, 198T, 204C, 263G |
| 15 | AF80–AF82, AF84 | 2 | 3 | 16172C, 16189C, 16223T, 16320T | 73G, 150T, 152C, 195C, 263G, 315C+ |
| 16 | AF83 (L3a) | … | 6 | 16185T, 16209C, 16223T, 16327T | 73G, 150T, 152C, 189G, 195C, 200G, 207A, 263G, 309C+, 315C+ |
| 17 | AF98–AF99 (L1a) | 1 | 7 | 16166C, 16172C, 16187T, 16189C, 16209C, 16214T, 16223T, 16230G, 16278T, 16291G, 16311C | 73G, 146C, 152C, 189G, 195C, 198T, 247A, 315C+ |
| 18 | AF101 (L1a) | 2 | … | 16166C, 16172C, 16187T, 16189C, 16209C, 16214T, 16223T, 16230G, 16278T, 16291G, 16311C | 73G, 146C, 152C, 189G, 195C, 198T, 204C, 207A, 247A, 309C+, 315C+ |
| 19 | AF101 (L1a) | 2 | … | 16166C, 16172C, 16189C, 16209C, 16214T, 16223T, 16230G, 16278T, 16291G, 16311C | 73G, 146C, 152C, 189G, 195C, 198T, 204C, 207A, 247A, 309C+, 315C+ |
| 20 | AF97 (L1a) | 1 | … | 16166C, 16172C, 16187T, 16189C, 16209C, 16214T, 16223T, 16230G, 16278T, 16291G, 16311C | 73G, 146C, 152C, 189G, 195C, 198T, 207A, 247A, 309C+, 315C+ |
| 21 | AF97, AF100 (L1a) | 5 | … | 16166C, 16172C, 16187T, 16189C, 16209C, 16214T, 16223T, 16230G, 16278T, 16291G, 16311C | 73G, 146C, 152C, 189G, 195C, 198T, 207A, 247A, 315C+ |
| 22 | AF103 (L1a) | … | 1 | 16129A, 16148T, 16172C, 16187T, 16188G, 16189C, 16223T, 16230G, 16311C, 16320T | 73G, 95C, 152C, 189G, 207A, 236C, 247A, 263G, 309C+, 315C+ |
| 23 | AF96 (L1a) | 1 | … | 16129A, 16148T, 16169T, 16172C, 16187T, 16188G, 16189C, 16223T, 16230G, 16278T, 16311C | 93G, 146C, 152C, 185A, 189G, 195C, 198T, 207A, 236C, 247A, 263G, 315C+ |
| 24 | AF102 (L1a) | … | 2 | 16129A, 16148T, 16168T, 16172C, 16187T, 16188G, 16189C, 16223T, 16230G, 16278T, 16293G, 16311C, 16320T, 16344T | 93G, 95C, 185A, 189G, 236C, 247A, 263G, 315C+ |