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. 2026 Jan 30;16:1727445. doi: 10.3389/fonc.2026.1727445

Figure 6.

Genomic map showing a chromosomal region with base pair positions ranging from 47,413,900 to 47,414,300. Varied color bars represent different nucleotides. The MSH2 gene sequence is indicated in blue across three lines. A chart below shows gain and loss regions with values labeled 0.03, -0.26, and -0.47.

In silico splicing analysis of the MSH2 variant using Pangolin. The deep-learning framework Pangolin was utilized to predict the impact of the identified germline variant (NM_000251.3:c.942 + 3A>T) on RNA splicing. The upper tracks display the RefSeq transcript isoforms for MSH2. The “PangolinΔ” track visualizes the predicted change in splice site usage probability (Delta score).