TABLE 2.
Binding of shikimate in HpSK (this work) and in MtSK (7)
Shikimate kinase, subsite, and atom | Atom | Distance (Å) |
---|---|---|
HpSK | ||
CX | ||
O-2 | Arg57 Nη2 | 3.41 |
Arg57 Cζ | 3.61 | |
Arg57 Nη1 | 2.93 | |
Arg116 Nη2 | 3.35 | |
Arg132 Nη2 | 2.70 | |
Arg132 Cζ | 3.60 | |
Arg132 Nη1 | 3.76 | |
C-1 | Gly81 N | 3.63 |
Arg132 Nη2 | 3.46 | |
Arg132 Nη1 | 3.69 | |
O-3 | Gly80 Cα | 3.43 |
Gly80 C | 3.55 | |
Gly81 N | 3.63 | |
Arg132 Nη2 | 3.52 | |
Arg132 Cζ | 3.63 | |
Arg132 Nη1 | 2.95 | |
Wat3 O | 2.57 | |
C-4 | None | |
OLID | ||
C-5 | Phe48 Cζ | 3.64 |
Arg116 Cγ | 3.68 | |
C-6 | Val44 Cγ1 | 3.56 |
Glu114 O | 3.52 | |
O-7 | Glu114 C | 3.80 |
Glu114 O | 2.73 | |
Arg116 N | 3.05 | |
Arg116 Cα | 3.71 | |
Arg116 Cβ | 3.49 | |
Arg116 Cγ | 3.74 | |
OCORE | ||
C-8 | Asp33 Oδ1 | 3.65 |
Asp33 Oδ2 | 3.45 | |
Glu114 O | 3.14 | |
O-12 | Wat2 O | 3.01 |
Asp33 Cγ | 3.47 | |
Asp33 Oδ1 | 2.84 | |
Asp33 Oδ2 | 3.36 | |
C-9 | Asp33 Oδ2 | 3.59 |
Glu114 O | 3.70 | |
Gly80 N | 3.64 | |
Met10 Cγ | 3.76 | |
O-11 | Asp33 Oδ2 | 2.78 |
Wat15 O | 3.71 | |
Gly79 Cα | 3.37 | |
Gly79 C | 3.63 | |
Gly80 N | 2.88 | |
Met10 Cγ | 3.58 | |
Wat11 O | 2.92 | |
C-10 | Gly80 N | 3.29 |
Gly80 Cα | 3.55 | |
MtSK | ||
CX | ||
O-2 | Arg58 Cζ | 3.70 |
Arg58 Nη2 | 2.59 | |
Gly81 N | 3.53 | |
Gly81 Cα | 3.58 | |
Arg136 Cζ | 3.52 | |
Arg136 Nη1 | 3.51 | |
Arg136 Nη2 | 2.84 | |
Leu119 Cδ1 | 3.06 | |
C-1 | Wat5 O | 3.50 |
Arg58 Nη2 | 3.77 | |
Gly81 N | 3.36 | |
Arg136 Nη1 | 3.42 | |
Arg136 Nη2 | 3.57 | |
O-3 | Pro11 Cγ | 3.51 |
Gly80 C | 3.63 | |
Wat5 O | 3.06 | |
Gly81 N | 3.45 | |
Arg136 Cζ | 3.35 | |
Arg136 Nη1 | 2.51 | |
Arg136 Nη2 | 3.43 | |
C-4 | Wat 3 O | 3.57 |
Wat5 O | 3.78 | |
Wat1 O | 3.36 | |
OLID | ||
C-5 | Wat3 O | 3.62 |
Wat1 O | 3.28 | |
C-6 | Phe49 Cɛ2 | 3.72 |
O-7 | Pro118 Cδ | 3.38 |
Wat3 O | 2.95 | |
OCORE | ||
C-8 | Asp34 Cγ | 3.56 |
Asp34 Oδ1 | 3.28 | |
Asp34 Oδ2 | 3.28 | |
Wat1 O | 3.67 | |
O-12 | Asp34 Cγ | 3.16 |
Asp34 Oδ1 | 2.53 | |
Asp34 Oδ2 | 3.10 | |
Gly79 Cα | 3.47 | |
Wat1 O | 2.53 | |
C-9 | Asp34 Oδ2 | 3.51 |
Wat6 O | 3.71 | |
Wat2 O | 3.73 | |
O-11 | Asp34 Cγ | 3.69 |
Asp34 Oδ2 | 2.67 | |
Wat 6 O | 3.15 | |
Gly79 Cα | 3.74 | |
Gly80 N | 3.10 | |
Wat2 O | 2.86 | |
C-10 | Gly80 N | 3.47 |
Gly80 Cα | 3.74 | |
Wat1 O | 3.76 |