TABLE 1.
Oligonucleotides used to monitor ERIC-positive RNAsa
| Primer | Sequence |
|---|---|
| pex. cheW | TTCGTGACGGTTGCTAGTCCTGCCA |
| pex. trpB | CCCGAACTCGCCAAAATAGGGATTC |
| pex. uncE | CGATAAAGAACTGTGTACGCAGCAG |
| pex. lpdA | GGATACAACCGACATTCAGGCACAC |
| cheB-for | atttaggtgacactatagaaAACTATCAGGTGCGTATTCATGATG |
| cheB-rev | taatacgactcactatagggGCTTCGTTTTGTGCAATGGTATAAG |
| cheY-for | atttaggtgacactatagaaTGGTAGACGATTTTTCGACCATGCG |
| cheY-rev | taatacgactcactatagggTCGGCATGTTCCAGTCAGAAACCAC |
| panB-for | atttaggtgacactatagaaGCTAACCAGCTATTGAAAGATGCTC |
| panB-rev | taatacgactcactatagggGAATATACAGCTTAATGGCAGCACG |
| panC-for | atttaggtgacactatagaaATTGAAACTTTGCCACTGTTACGCC |
| panC-rev | taatacgactcactatagggATACTCACGACGACAACATCGGCAC |
The oligonucleotides used as primers in RNA extension assays are listed at the top. The pairs of 45-mers shown at the bottom have been used to obtain by PCR DNA amplimers in which copies of the bacteriophage T7 promoter (underlined residues) direct the synthesis of antisense RNA probes (Fig. 6). Uppercase residues mark Y. enterocolitica sequences.