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. Author manuscript; available in PMC: 2026 Feb 20.
Published in final edited form as: Proc Conf Empir Methods Nat Lang Process. 2025 Nov;2025:27337–27362. doi: 10.18653/v1/2025.emnlp-main.1390

Table 5:

BioAssay retrieval result using the TFPI description as input. The Score is measured with cosine similarity. Only four out of 300 BioAssays are related to TFPI while others have the opposite function in the pathway.

BioAssay Score Target Relationship

1381622 0.8284 Tissue factor, Coagulation factor VII Opposite
51307 0.8245 Tissue factor, Coagulation factor VII Opposite
397857 0.8233 Tissue factor, Coagulation factor VII Opposite
385437 0.8202 Tissue factor Opposite
385438 0.8194 Tissue factor Opposite
385435 0.8190 Tissue factor Opposite
385436 0.8188 Tissue factor Opposite
1871821 0.8183 Coagulation factor VII Opposite
360094 0.8182 Tissue factor Opposite
385434 0.8180 Tissue factor Opposite


1620662 0.7941 Tissue factor pathway inhibitor Correct
1620663 0.7903 Tissue factor pathway inhibitor Correct


1476906 0.7888 Coagulation factor XII Opposite
1775843 0.7888 Carboxypeptidase B2 Opposite
304051 0.7888 Carboxypeptidase B2 Opposite
52023 0.7888 Coagulation factor X Opposite
1426475 0.7888 Coagulation factor X Opposite
1775842 0.7888 Carboxypeptidase B2 Opposite
212091 0.7887 Tissue factor Opposite
362212 0.7887 TISSUE: Plasma Opposite
1382994 0.7886 Coagulation factor X Opposite
1657762 0.7886 TISSUE: Plasma Opposite