Table 1.
Overview of available approaches to overcome precision, off-target (OT) and targetability issues.
| Goal | Type | Editor | Efficiency* | Editing window (vs 3–10*) | Off-targets* | References |
|---|---|---|---|---|---|---|
| Precision | Deaminase mutations |
ABE9e-NG (R111T, N127K, Q154R) ABE8e-N108Q ABE9 (N108Q, L145T) |
Similar Similar > -20% |
(3)4–7(8) at similar activity 4–7 5–6 |
Reduced DNA and RNA OTs | |
| Split editor |
PIGS-ABE8e sABE v3.22 |
> -40% > -25% |
4–9 4–7 |
Reduced DNA and RNA OTs | ||
| Effector domain | ABE8e-e18 | > -10% | 5–7 | Reduced DNA OTs | 40 | |
| Off-target reduction | Deaminase mutations |
ABE8e-V106W ABE8.17-m-V106W ABE8e-WA ABE8e-WQ |
Similar > -10% Similar > -20% |
Similar Similar 4–8 4–8 |
Reduction of DNA & RNA OTs Reduced RNA OTs |
|
| Deaminase mutation (+ Cas9 variant) |
SpRY-ABE8e-F148A CE-ABE8e-SpRY CE-ABE8e-dV-SpRY |
Similar Similar Similar |
Similar Similar Similar |
Reduced RNA OTs Slightly reduced DNA OTs and reduced RNA OTs Reduced indels, RNA and DNA OTs |
||
| Cas9 variant | Sniper2L | Low mismatch tolerance (only 1 tolerated) | 39 | |||
| Target-ability | Cas9 variant |
ABEmax-SpRY ABE8e-SpRYc |
PAMless; targetability across NNN PAMs but likely massive increase in DNA OTs PAMless; at certain selected loci more unbiased than ABE8e-SpRY |
|||
*Mostly compared to ABE8e.