BM	Bovine mastitis
CM	Clinical mastitis
SCM	Subclinical mastitis
DH	Dairy herd
E. coli	Escherichia coli
K. pneumoniae	Klebsiella pneumoniae
KpSC	K. pneumoniae species complex
K. oxytoca	Klebsiella oxytoca
KoSC	K. oxytoca species complex
K. grimontii	Klebsiella grimontii
STs	Sequence types
KL	K Locus
AMR	Antimicrobial resistance
WHO	World Health Organization
MDR	Multidrug resistance
ARG	Antimicrobial resistance genes
VF	Virulence factor
RM	Raw milk
WGS	Whole-genome sequencing
AST	Antimicrobial susceptibility testing
AK	Amikacin
Aug-E	Amoxicillin–clavulanate acid
AM	Ampicillin
AZT	Aztreonam
Cpe	Cefepime
Cft	Cefotaxime
Cft/CA	Cefotaxime–clavulanate acid
Cfx	Cefoxitin
Caz	Ceftazidime
Caz/CA	Ceftazidime–clavulanate acid
Crm	Cefuroxime
Cp	Ciprofloxacin
Cl	Colistin
Etp	Ertapenem
Fos	Fosfomycin
Gm	Gentamicin
Imp	Imipenem
Lvx	Levofloxacin
Mer	Meropenem
NA	Nalidixic acid
Fd	Nitrofurantoin
Nxn	Norfloxacin
P/T	Piperacillin–tazobactam
To	Tobramycin
T/S	Trimethoprim–sulfamethoxazole
ANI	Average nucleotide identity
CDS	Coding sequence
COGs	Clusters of orthologous groups
CARD	Comprehensive Antibiotic Resistance Database
NCBI	National Center for Biotechnology Information
ARG-ANNOT	Antibiotic Resistance Gene-ANNOtation
VFDB	Virulence Factor Database
Y. pestis	Yersinia pestis
ESBL	Extended-Spectrum Beta-Lactamase
MIC	Minimum Inhibitory Concentration