TB	tuberculosis
MTBC	Mycobacterium tuberculosis complex
MB894	Mycobacterium bovis strain 894
BALT	Bronchus-Associated Lymphoid Tissue
SNPs	single nucleotide polymorphisms
INDELs	insertions/deletions
TB-LL	Tuberculosis-Like Lesions
CFU	Colony Forming Units
bPPD	bovine Purified Protein Derivative
IFNγ	Interferon gamma
TNFα	tumor necrosis factor alpha
IL-10	interleukin 10
OD	optical density
TLC	Thin Layer Chromatography
PDIMs	phthiocerol dimycocerosate
ORF	Open Reading Frame