| 4CL | 4-coumaryl-CoA ligase |
| AXS | Apiose/xylose synthase |
| C3H | Coumaryl quinine 3-monooxygenase |
| C4H | Cinnamic acid 4-hydroxylase |
| CBMs | Carbohydrate-binding modules |
| CCS | Circular consensus sequence |
| CCoAOMT | Cafeoyl coenzyme A-O-methyltransferase |
| CDS | Coding sequence |
| CesA | Cellulose synthase |
| CHI | Chalcone isomerase |
| CHS | Chalcone synthase |
| DEGs | Differentially expressed genes |
| DRIRs | Drought-induced lncRNAs |
| F3′5′H | Flavonoids 3′,5′-hydroxylase |
| F3′H | Flavonoid 3-monooxygenase |
| F5H | Ferulate-5-hydroxylase |
| FDR | False discovery rate |
| FLNC | Full-length non-chimeric reads |
| FPKM | The expected number of fragments per kilobase of transcript sequence per million base pairs sequenced |
| FRKs | Fructokinases |
| galU | Uridine diphosphate glucose pyrophosphorylase |
| GHs | Glycoside hydrolases |
| Glc-1P | Glucose-1-phosphate |
| GMPP | Mannose-1-phosphateguanylyltransferase |
| GTs | Glycosyltransferases |
| HXKs | Hexokinases |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| KOG | Eukaryotic orthologous groups |
| Iso-Seq | Isoform sequencing |
| lncRNAs | Long non-coding RNAs |
| NSEs | NDP-sugar interconversion enzymes |
| OMT1 | Caffeic acid O-methyltransferase 1 |
| PAL | Phenylalanine ammonia-lyase |
| PI | Isoelectric point |
| PGM | Phosphoglucose mutase |
| PLs | Polysaccharide lyases |
| qRT-PCR | Quantitative real-time PCR |
| RIN | RNA integrity number |
| SSRs | Simple sequence repeats |
| SUS | Sucrose synthase |
| TFs | Transcription factors |
| TMM | The trimmed mean of M value |
| UGDH | UDP-glucose 6-dehydrogenase |
| UDP-Glu | Uridine diphosphate glucose |
| UER1 | 3,5 epimerase/4-reductase |
| UGPase | UDP-glucose pyrophosphorylase |
| UGT | UDP-glycosyltransferase |
| UXE | UDP-arabinose-4-epimerase |