Skip to main content
. 2002 Sep 9;99(19):12132–12137. doi: 10.1073/pnas.192438999

Table 2.

Net atomic charges for C, N, and O atoms from experiment and theory

Atoms
Conformer A
Experiment P-B3LYP/3-21G* M-B3LYP/6-31G**
q(Pv) q(Ω) q(Pv) q(Ω)
O1 −0.54 (4) −1.07 −0.41 −1.24
O2 −0.37 (4) −0.99 −0.41 −1.20
O3 −0.45 (3) −0.87 −0.41 −1.22
O4 −0.55 (4) −1.07 −0.41 −1.21
O5 −0.49 (3) −0.91 −0.40 −1.20
O6 −0.57 (3) −0.89 −0.41 −1.21
O7 −0.54 (5) −1.13 −0.33 −1.12
O8 −0.54 (5) −1.26 −0.45 −1.08
O9A −0.54 (4) −1.24 −0.43 −1.10
N1 −0.31 (6) −1.04 −0.39 −1.20
N2 −0.63 (12) −1.35 −0.39 −1.29
N3 −0.26 (6) −0.94 −0.36 −1.24
N4 −0.09 (7) −0.80 −0.40 −1.19
N5 −0.32 (6) −1.05 −0.40 −1.28
N6 −0.24 (6) −0.98 −0.40 −1.28
C1 0.38 (5) 1.55 0.41 2.11
C2 0.30 (5) 1.19 0.32 1.54
C3 0.37 (4) 1.10 0.28 1.49
C4 0.24 (6) 1.12 0.30 1.49
C5 0.37 (4) 1.10 0.29 1.53
C6 0.37 (4) 1.10 0.30 1.54
C7 0.01 (5) 0.21 0.11 0.44
C8 0.07 (5) 0.41 0.07 0.57
C9A 0.07 (5) 0.37 0.00 0.58
C10 0.03 (6) 0.21 0.06 0.41
C11 −0.03 (6) 0.20 0.04 0.38
C12 −0.07 (7) 0.13 0.06 0.38
C13 0.03 (6) 0.21 0.06 0.43
C14 −0.03 (7) 0.24 0.06 0.41
C15 0.23 (5) 0.18 −0.19 0.09
C16 0.23 (5) 0.17 −0.19 0.07
C17 0.23 (5) 0.25 −0.19 0.10
C18 −0.03 (7) 0.11 −0.20 0.37
C19 0.09 (8) 0.06 −0.19 0.09
C20 0.23 (5) 0.15 −0.19 0.09
C21 0.10 (7) 0.11 −0.30 0.08
C22 0.10 (7) 0.11 −0.30 0.08
C23 0.10 (7) 0.12 −0.30 0.09
C24 0.10 (7) 0.06 −0.30 0.07
C25 0.10 (7) 0.08 −0.30 0.08
C26 0.10 (7) 0.04 −0.30 0.08
C27 0.21 (7) 0.13 0.01 0.01
C28 −0.18 (5) −0.03 −0.06 −0.01
C29 −0.18 (5) −0.09 −0.10 −0.01
C30 −0.18 (5) −0.09 −0.12 0.00
C31 −0.18 (5) −0.10 −0.10 0.01
C32 −0.18 (5) −0.02 −0.06 0.01
Σq 0.001 0.11 0.04
Σ|L| 1 × 10−1 4 × 10−2
Average L(Ω) per atom 1 × 10−3 4 × 10−4

q(Pv), net atomic charge derived from monopole population; q(Ω), net atomic charge obtained from topological analysis. The prefixes P and M indicate periodic and molecular calculations, respectively.

After rescaling, the whole molecule keeps neutrality.