CHIKV	Chikungunya virus
NGS	Next-generation sequencing
TGS	Third-generation sequencing
ONT	Oxford Nanopore Technologies
WGS	Whole-genome sequencing
ECSA	East/Central/South African
SNV	Single-nucleotide variant
UTR	Untranslated region
RT-PCR	Reverse transcription polymerase chain reaction
Ct	Cycle threshold
CDS	Coding sequence