Table 2.
Statistics of whole-genome protein cluster analysis for the three Xf strains
| Genomes
|
Clusters | ORFs | |||
|---|---|---|---|---|---|
| No. of clusters | ORFs in clusters | XFA | XFX | XFY | |
| XFA + XFX + XFY | 1,705 (38) | 7,002 (130) | 2,277 (42) | 2,339 (41) | 2,386 (47) |
| XFA + XFX | 114 (44) | 239 (90) | 123 (44) | 116 (46) | — |
| XFA + XFY | 183 (37) | 398 (78) | 196 (38) | — | 202 (40) |
| XFX + XFY | 85 (17) | 187 (35) | — | 93 (17) | 94 (18) |
| XFA | 375 (205) | 389 (211) | 389 (211) | — | — |
| XFX | 132 (77) | 133 (78) | — | 133 (78) | — |
| XFY | 180 (77) | 188 (81) | — | — | 188 (81) |
| Total | 2,774 (495) | 8,536 (703) | 2,985 (335) | 2,681 (182) | 2,870 (186) |
Protein clusters were calculated for the XFA, XFX, and XFY genomes (see Materials and Methods). The number of ORFs for each appropriate Xf strain comprising each protein cluster set (from Fig. 1) is indicated. In parenthesis are the corresponding clusters/ORFs with no similarity hits better than 10−2, against any other organism.