Table 2.
Main characteristics of transposable elements (TEs) identified in the genome of Acyclania tenebrosa through DnaPipeTE (TE class) and by repeatexplorer along with CENSOR classification (TE). For each repeat, abundance and Kimura 2-parameter divergence (K2P) are provided. Repeat length (base pairs, bp) is shown for TEs from repeatexplorer analysis
| TE classification | Abundance (%) | K2P divergence (%) | Length (bp) | A + T (%) |
|---|---|---|---|---|
| dnaPipeTE | ||||
| DNA | 4.01 | 11.32 | ||
| LINE | 19.62 | 14.27 | ||
| LTR | 14.78 | 9.83 | ||
| Helitron | 6.25 | 15.65 | ||
| SINE | 4.94 | 20.96 | ||
| unknown | 4.07 | 11.34 | ||
| Total abundance | 53.67 | |||
| Man divergence | 13.895 | |||
| RepeatExplorer/CENSOR | ||||
| LINE-RTE | 6.4 | 13.78 | 3,462 | |
| Unclassified/REP-3_Lmi | 1.52 | 9.93 | 1,588 | |
| LTR-BEL/Pao | 1.11 | 7.16 | 6,938 | |
| LINE-Jockey | 1.91 | 15.80 | 5,123 | |
| LTR-Gypsy | 1.00 | 8.87 | 5,086 | |
| LINE-Jockey/Daphne | 0.23 | 12.16 | 2,954 |